PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020736m
Common NameCARUB_v10020736mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family DBB
Protein Properties Length: 292aa    MW: 32052.8 Da    PI: 6.1178
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020736mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box216.8e-07447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e+   C  ++  lC +C +++H        H++vpl
  Carubv10020736m  4 QCNVCEAAEAVVLCCADEAALCWSCDEKIHAAnklagkHQRVPL 47
                     7******99*********************66899999999986 PP
2zf-B_box25.33.1e-085490337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                      +kC+ ++e    +fC +++ llC++C +++H     H
  Carubv10020736m 54 IPKCDICQEASGFFFCLQDRALLCRKCDVAIH-TvnpH 90
                     689*******9********************9.33452 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.267147IPR000315B-box-type zinc finger
CDDcd000211.08E-7347No hitNo description
SMARTSM003361.2E-10447IPR000315B-box-type zinc finger
SMARTSM003363.8E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595299IPR000315B-box-type zinc finger
CDDcd000211.59E-85599No hitNo description
PfamPF006433.0E-65589IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKIQCNVCEA AEAVVLCCAD EAALCWSCDE KIHAANKLAG KHQRVPLTVS SSSIPKCDIC  60
QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT GIKVGLESID TGPSAKSSPT  120
NDDQTTMETK PFVQSISEHQ KMTFDHQQGV LPESKVSDQI STKLPFASSG SATGSIPQWQ  180
IEEIFGLTDF DQSYEYMENN GSSKADYSRR GDSDSSSMMR SAEEDAEDNI NCLGDETSWA  240
VPQIQSPPTA SGLNWPKHFH HHSVFVPDIS SSTLYTGSSP KQRVGKRRRR F*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020736m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526340.0AK352634.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302631.10.0B-box zinc finger protein 22
SwissprotQ9SYM20.0BBX22_ARATH; B-box zinc finger protein 22
TrEMBLR0I0540.0R0I054_9BRAS; Uncharacterized protein
STRINGCagra.1361s0006.1.p0.0(Capsella grandiflora)
STRINGXP_006302631.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-162light-regulated zinc finger protein 1