PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10020714m | ||||||||
Common Name | CARUB_v10020714mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 34222.1 Da PI: 6.3128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl Carubv10020714m 15 KGLWSPEEDEKLLNYITKHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 1e-14 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE++l+v++++ lG++ W+ Ia++++ gRt++++k+ w++ Carubv10020714m 68 RGAFSSEEQDLIVELHAVLGNR-WSQIAARLP-GRTDNEIKNLWNS 111 89********************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.188 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-30 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.80E-11 | 18 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.754 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.72E-8 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MKRSHSCCYK QKLRKGLWSP EEDEKLLNYI TKHGHGSWSS VPKLAGLQRC GKSCRLRWIN 60 YLRPDLKRGA FSSEEQDLIV ELHAVLGNRW SQIAARLPGR TDNEIKNLWN SCIKKKLRQK 120 GIDPITHKPL SEVDGDTNIS FNHSSTSFSS ESNQDFFVKE PSDFSDYLAF QKQDTNSVSQ 180 SSMIDGSSVS ISGFETQSYV KSSIPPRDNT SSTISGEDHV QVIEPTWESN FGTTSHLDNP 240 SLEEMKWSEE YLNESLFLNP VYVKSETDFD SNIAFPWSQS QACDVIPKDL QRMVFSFGQT 300 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10020714m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY550304 | 1e-160 | AY550304.1 Arabidopsis thaliana MYB transcription factor (At1g57557) mRNA, complete cds. | |||
GenBank | BT029225 | 1e-160 | BT029225.1 Arabidopsis thaliana At1g57560 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302609.1 | 0.0 | transcription factor MYB61 | ||||
Swissprot | Q8VZQ2 | 1e-119 | MYB61_ARATH; Transcription factor MYB61 | ||||
TrEMBL | R0GI25 | 0.0 | R0GI25_9BRAS; Uncharacterized protein | ||||
STRING | XP_006302609.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 1e-161 | myb domain protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10020714m |
Entrez Gene | 17894392 |
Publications ? help Back to Top | |||
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