PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10020691m | ||||||||
Common Name | CARUB_v10020691mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 35441 Da PI: 5.6304 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl Carubv10020691m 36 RGPWSPEEDLKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYL 83 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 89 | 134 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l Carubv10020691m 89 RGNFTAEEEATIIKLHQNYGNK-WSKIASQLP-GRTDNEIKNVWHTHL 134 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 27 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.411 | 31 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.34E-30 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 36 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-9 | 38 | 83 | No hit | No description |
PROSITE profile | PS51294 | 25.875 | 84 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-28 | 87 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 89 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.50E-10 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MHHVDAKSNT ENRKRREGER MGKGRAPCCD KTKVKRGPWS PEEDLKLISF IQKFGHENWR 60 SLPKQSGLLR CGKSCRLRWI NYLRPDLKRG NFTAEEEATI IKLHQNYGNK WSKIASQLPG 120 RTDNEIKNVW HTHLKKRLVQ SSGTDHTADE PANSSPCSSD SVSRGEVSLN RTTRNALSTS 180 VSSGGSNHSI QEDDPKIGMT FEYIEEAYSD FNDIIQEVDK PDLLEIPFEP DPDIWSYLDA 240 SNSFQQSAAN EFSSASRPEE ESDEDEVKKW FKHLESELGL EDDDGQQQRT HDNKEESSSS 300 LLKNYELMIH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-24 | 36 | 138 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10020691m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175344 | 1e-152 | AK175344.1 Arabidopsis thaliana mRNA for putative transcription factor (MYB63), complete cds, clone: RAFL21-78-M22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023643488.1 | 0.0 | transcription factor MYB63 | ||||
Swissprot | Q6R0A6 | 1e-159 | MYB63_ARATH; Transcription factor MYB63 | ||||
TrEMBL | R0GID1 | 0.0 | R0GID1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006302583.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 1e-149 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10020691m |
Entrez Gene | 17895999 |
Publications ? help Back to Top | |||
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