PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10020610m | ||||||||
Common Name | CARUB_v10020610mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 339aa MW: 37780.9 Da PI: 6.9856 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.4 | 5.7e-32 | 34 | 88 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl Carubv10020610m 34 KPRLKWTCDLHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 88 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-28 | 32 | 89 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-15 | 33 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-22 | 34 | 89 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-5 | 36 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.5E-23 | 138 | 184 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MCLLMEINNN GNDNNNSVNH KAKVMSLVLS TDAKPRLKWT CDLHHRFIEA VNQLGGPNKA 60 TPKGLMKAME IPGLTLYHLK SHLQKYRLGK SMKFDDNKLE AVSSASENQE AESNSESRDL 120 RGCSVTEGNS NPTKEGLQIT EALQMQMEVQ KKLHEQIEVQ RHLQVKIEAQ GKYLQSVLMK 180 AQQTLAGYTS STLGMDFART ELSRLASMVN RGCPSSSFSE LTQEEEAEEG FLWCKKPGNR 240 GISQLRCSVE SSLTSSETSE TKVDDNNNIN KSIELPLMEI KSEVIKGKKR SLNDAVCVEH 300 QPQMKRAFGV DEDEHLKLSL NSYKKDMEAC PNIGLGFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10020610m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029516 | 0.0 | BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302512.1 | 0.0 | myb family transcription factor PHL8 isoform X1 | ||||
Swissprot | F4I274 | 0.0 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | R0IB87 | 0.0 | R0IB87_9BRAS; Uncharacterized protein | ||||
STRING | XP_006302512.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3878 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10020610m |
Entrez Gene | 17896580 |
Publications ? help Back to Top | |||
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