PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020555m
Common NameCARUB_v10020555mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 353aa    MW: 39927.2 Da    PI: 4.8446
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020555mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1302.4e-40862332129
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec....eaesssssasns 85 
                       +kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++k+aike ++       +    +++     +++++ ++++ 
  Carubv10020555m  86 VVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASKTLDWLLKKSKKAIKEVVQEkrlnndN---DQDSgdngGDVEEEMEEEE- 175
                      589*************************************************************7774431...3333322322222222222. PP

              TCP  86 ssg...............kaaksaakskksqksaasalnlak.esrakarararertrek 129
                        +               ++   + k+ +++k++ + +n++   sra+ r +a+e tre 
  Carubv10020555m 176 --DgdksfvygsspescgEKLVCEVKKADKRKKKDELRNISSkGSRANTRGKAKEVTREM 233
                      ..13446777888888888888888777777777778888877999*********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-3888233IPR005333Transcription factor, TCP
PROSITE profilePS5136935.89888146IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSSSNNDYND GNNNGVYPLS LYLSSLSGHQ DIIRNPYNQQ LTASPGQMVT AVPESLMDYM  60
AFNSNNNAVN QQGFELPEVS REIKKVVKKD RHSKIHTAQG LRDRRVRLSI GVARQFFDLQ  120
DMLGFDKASK TLDWLLKKSK KAIKEVVQEK RLNNDNDQDS GDNGGDVEEE MEEEEDGDKS  180
FVYGSSPESC GEKLVCEVKK ADKRKKKDEL RNISSKGSRA NTRGKAKEVT REMAYDHLET  240
ISDITQSETM DSFKRSLFSN EGEDMTHSFY KETIGEFYNQ ESILTKMKIN MPTNMDQSYN  300
QHTGAFMLTD QGSSSNYNTI DLPLLDYNYE QNPFVDQTFC AITDTNFPGG FP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1493146154Putative transcription factor PCF6
5zkt_B4e-1493146154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020555m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644287.10.0transcription factor TCP1
SwissprotQ9FYG71e-161TCP1_ARATH; Transcription factor TCP1
TrEMBLR0GHY50.0R0GHY5_9BRAS; Uncharacterized protein
STRINGXP_006302463.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-146TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]