PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020515m
Common NameCARUB_v10020515mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 365aa    MW: 40334.9 Da    PI: 6.2581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020515mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75.1e-14171217354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  Carubv10020515m 171 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 217
                      79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-14172227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.50E-5181220No hitNo description
Gene3DG3DSA:3.30.70.2602.7E-4257312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MCAKKEEEED SSRAMNNIQN YQNDLFFHQL ISHHHHHHDP SQSETFGPSG NVGSGFTILS  60
QDSVSPIWSL PPTTSIQPPF DQFPPPSSTP GSFYGSFFNR SRAHHQGVQF GYEGFGGATS  120
AAHHHHEQLR ILSEALGPVV QAGSGPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR  180
RERINNHLAK LRSILPNTTK TDKASLLAEV IQHVKELKRE TSVISETNLV PTESDELTVA  240
FTEEEDTGDG RFVIKASLCC EDRSDLLPDM IKTLKAMRLK TLKAEITTVG GRVKNVLFVT  300
GEESSGEEVE EEYCIGTIEE ALKAVMEKSN VEESSSSGNA KRQRMSSHNT ITIVEQQQQH  360
HHQR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020515m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721610.0AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBankAY1229830.0AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302435.10.0transcription factor bHLH30
SwissprotQ9S7Y10.0BH030_ARATH; Transcription factor bHLH30
TrEMBLR0IF050.0R0IF05_9BRAS; Uncharacterized protein
STRINGCagra.1157s0003.1.p0.0(Capsella grandiflora)
STRINGXP_006302435.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]