PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020487m
Common NameCARUB_v10020487mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 375aa    MW: 42453.6 Da    PI: 6.8793
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020487mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.72e-421272542133
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 
                      a+k+drhski+T++g+RdRR+Rls+++a+rfFdLqd+LGfdk+sktieWL+ ++k++ik+l ++ + s+    +++++s+a+  +++k +  + 
  Carubv10020487m 127 AKKRDRHSKICTAQGPRDRRMRLSLQIARRFFDLQDMLGFDKASKTIEWLFSKSKASIKQLKESVAASE--GGEDDEHSQAN--EKAKDEILKV 216
                      789*************************************************************44444..32233333333..2233344444 PP

              TCP  96 kskksqksaasalnlakesrakarararertrekmrik 133
                      k +k+++++ + + ++ke r++ar+rarert  km+++
  Carubv10020487m 217 KVSKRRTKTMESSCKMKELRERARKRARERTITKMKMR 254
                      66667777777788899*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-35128253IPR005333Transcription factor, TCP
PROSITE profilePS5136936.3129187IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.667233252IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
EKEDSVFLPV SLFNLMFPSL DTNGYVLFDT FSPRQTTILP PFTTHIQSPS SNHHFPSPSF  60
SFSPDFLENA DESFLLSQFL FQEQDAAANV VESPRKVCKK LEKKKHNDKC VEEDTTSSEK  120
VSERRMAKKR DRHSKICTAQ GPRDRRMRLS LQIARRFFDL QDMLGFDKAS KTIEWLFSKS  180
KASIKQLKES VAASEGGEDD EHSQANEKAK DEILKVKVSK RRTKTMESSC KMKELRERAR  240
KRARERTITK MKMRLSGLVD TSETISDPQQ ATREIKISNG AQVLDGKNQE QEWSTNVNMV  300
EYQMDSVSII EKFLGLTSES SSSSIFGDSE ESNTNLSSIR GVVAPSEHNT ASIASVDEET  360
NPISSFSLYD YLCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235245RERARKRARER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020487m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302415.20.0transcription factor TCP12 isoform X1
SwissprotA0AQW41e-171TCP12_ARATH; Transcription factor TCP12
TrEMBLR0IEY80.0R0IEY8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006302415.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-155TCP domain protein 12