PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020454m
Common NameCARUB_v10020454mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 385aa    MW: 42261.9 Da    PI: 6.104
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020454mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.33.4e-3896157263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      k+++ +cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+PvGgg rk k+sss
  Carubv10020454m  96 KDQSFNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTQGGSLRNIPVGGGIRKTKRSSS 157
                      68899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3185148IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3298154IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.379100154IPR003851Zinc finger, Dof-type
PROSITE patternPS013610102138IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MYVLLYKWYP TCIDDDLTTY KLTQTNNSNC EELVEVKREN EECVYLNFSI AMDTAQWPQE  60
FVVKPMNEIV TNSCLKHPPP PPPPATPAER KARPEKDQSF NCPRCNSLNT KFCYYNNYSL  120
TQPRYFCKDC RRYWTQGGSL RNIPVGGGIR KTKRSSSSPS SSSSSSSPKK PPLAINTNSP  180
APNPKTGEAA AKVQDLTFSP GFGNAHEVKD LNLAFSQGFG IAYHQHHTIP EFLQVTPSSS  240
SMKNNNNPLV STSSALELLG ISASSNSRPA FMSFPNVHDS SVYTASGFGL SYPQFQEFMR  300
PALGFFLDGG DPLHQEEGSS GTTTATTNSG RPLLPFESLK LPVSSPSTNS GGNVKEDDDH  360
SDRGQEEKEE GEADQSVGFW NMAC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020454m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0848981e-109AY084898.1 Arabidopsis thaliana clone 120488 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023643464.10.0dof zinc finger protein DOF1.8
SwissprotQ84JQ81e-158DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLR0HU720.0R0HU72_9BRAS; Uncharacterized protein
STRINGXP_006300506.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-146Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]