PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10020411m

Common Name

CARUB_v10020411mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 400aa MW: 42236.2 Da PI: 6.7264

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10020411m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.5	3.3e-40	57	180	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ Carubv10020411m 57 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpskslp 150 789*************************************************************999999998888888888855555666666 PP TCP 89 .............................k 89 + Carubv10020411m 151 lygalglthhhhqhqhqhqydeqggggafA 180 776666655443333444444444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-41	62	224	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	63	117	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDLSRNNNDT AAAAVTGGAR QLVDASLTIV PRSTPLEDST LSTTTTTTTN SVTAAATTTK 60 RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT 120 GTIPANFSTL SVSLRSSGST LSAPPSKSLP LYGALGLTHH HHQHQHQHQY DEQGGGGAFA 180 TAPLLGFHHH LQQQQAPVET ITDGESFSRK RYRSVDLSKE NDDQKQNESK SLKESDPAAA 240 PMWAVAPTSR ASGGNTFWML PVPTTAGNQM ESSSNNNNNT VGHRAPMWPF VNSAGAGGGG 300 GGGGGATHFM AGTGFSFPMD QYRGSPLQLG SFVAQPQPTQ NLGLSMPDSN LGMLAALNAA 360 YSRGGNGNAN AEQAVEHQEK PQQSEHDEDS REDNSNSSE*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDLSRNNNDT AAAAVTGGAR QLVDASLTIV PRSTPLEDST LSTTTTTTTN SVTAAATTTK  60
RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT  120
GTIPANFSTL SVSLRSSGST LSAPPSKSLP LYGALGLTHH HHQHQHQHQY DEQGGGGAFA  180
TAPLLGFHHH LQQQQAPVET ITDGESFSRK RYRSVDLSKE NDDQKQNESK SLKESDPAAA  240
PMWAVAPTSR ASGGNTFWML PVPTTAGNQM ESSSNNNNNT VGHRAPMWPF VNSAGAGGGG  300
GGGGGATHFM AGTGFSFPMD QYRGSPLQLG SFVAQPQPTQ NLGLSMPDSN LGMLAALNAA  360
YSRGGNGNAN AEQAVEHQEK PQQSEHDEDS REDNSNSSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10020411m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079131	1e-132	AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBank	AC079604	1e-132	AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBank	AY081344	1e-132	AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBank	BT008493	1e-132	BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBank	CP002684	1e-132	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302348.1	0.0	transcription factor TCP8
Swissprot	Q9C518	0.0	TCP8_ARATH; Transcription factor TCP8
TrEMBL	R0GHN8	0.0	R0GHN8_9BRAS; Uncharacterized protein
STRING	XP_006302348.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-171	TCP family protein

Link Out ? help Back to Top
Phytozome	Carubv10020411m
Entrez Gene	17895605

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]