PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020393m
Common NameCARUB_v10020393mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 408aa    MW: 45933 Da    PI: 4.4575
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020393mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.13.7e-082163540
         zf-B_box  5 kCpeHee.kelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+++ +  +++++C  ++ +lC++C  ++H+       H++v
  Carubv10020393m 21 GCDLCMKrSRASWYCPADDAFLCQSCDASIHSAnslakrHERV 63
                     5*****9556*********************657788888876 PP
2CCT68.91.4e-23360403144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Carubv10020393m 360 REARVLRYREKRRTRLFAKKIRYEVRKLNAEQRPRIKGRFVKRT 403
                      9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-101765IPR000315B-box-type zinc finger
PROSITE profilePS501199.3851765IPR000315B-box-type zinc finger
CDDcd000212.68E-92265No hitNo description
PfamPF006432.2E-62263IPR000315B-box-type zinc finger
PROSITE profilePS5101716.202360402IPR010402CCT domain
PfamPF062036.2E-18360402IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVVDVESRAP SVTGGKTAAR GCDLCMKRSR ASWYCPADDA FLCQSCDASI HSANSLAKRH  60
ERVRLQSSSS PELPMKTKTA EKTTSVWYEG FRRKARTPRN KLFQIEDVNK NSNDPLVPDL  120
GVEEEEDGVF SFSSTDENDA SLSCCVPVFD PFSDMVIDDD SFGLVPDGVH ITNSSGEFGE  180
IEKAIMDDEG LVGFLPFDMD LEEIVMDVES LLEEEQPSLG VKELNSIGVV KEETNVGFEF  240
DSKDLKRVKD EEEAQEEEEE EVKCEHGEST EGSDREACED EDRKTSLFLR LDYEAVISAW  300
DNHGSPWKTE IKPEFNLDDC LLEGNTYPSH VMGGFEEWTS AVGSVTRRQG RDGGGSDVER  360
EARVLRYREK RRTRLFAKKI RYEVRKLNAE QRPRIKGRFV KRTSLSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370386RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020393m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302335.10.0zinc finger protein CONSTANS-LIKE 7
SwissprotQ9C9A90.0COL7_ARATH; Zinc finger protein CONSTANS-LIKE 7
TrEMBLR0IES10.0R0IES1_9BRAS; Uncharacterized protein
STRINGXP_006302335.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1750679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]