PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020384m
Common NameCARUB_v10020384mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 411aa    MW: 46266.8 Da    PI: 5.0755
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020384mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61e-071356340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + + +++++C  ++ +lC+ C  + H+       H++v
  Carubv10020384m 13 ARACDSCVKRRARWYCAADDAFLCHGCDGSVHSAnplarrHERV 56
                     578*****************************657888888876 PP
2CCT68.41.8e-23361404144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Carubv10020384m 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 404
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4951158IPR000315B-box-type zinc finger
SMARTSM003362.3E-91158IPR000315B-box-type zinc finger
PfamPF006435.5E-61356IPR000315B-box-type zinc finger
CDDcd000211.42E-81458No hitNo description
PfamPF062035.3E-18361403IPR010402CCT domain
PROSITE profilePS5101716.083361403IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MKSLASAVGG KTARACDSCV KRRARWYCAA DDAFLCHGCD GSVHSANPLA RRHERVRLKS  60
ASSGKHRHVP TSPPPTWHQG FTRKARTPRG GKKSHTMVFH DFVPEMSTED QAESYEVEGQ  120
LIFEVPVMNP MVEEQCFNES VETKIEFPMR PVCFKSSDEE DEDNAESCLN GLFPTDIELA  180
QFTADVETLL GGGAERDFQP TGELGLGEMM KIEKEEVEEE EGVATRDMCD LDEVDETSPF  240
EISFDYESAS KTSTNEEEEE DEKEDVMKNV MDMGVNEMSG KIKEENKEKA LMLRLNYESV  300
ISTWGGQGIP WTAQQPSEID LDMVCCPTDS MGESGVDQAH HYNHFRGLGL RMGEAHGDGG  360
REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRSSVVAAH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371387RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020384m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302328.10.0zinc finger protein CONSTANS-LIKE 6
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLR0GHM30.0R0GHM3_9BRAS; Uncharacterized protein
STRINGXP_006302328.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]