PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020337m
Common NameCARUB_v10020337mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 428aa    MW: 48144.6 Da    PI: 8.3982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020337mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-067294123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F r  nL+ H r+H
  Carubv10020337m 72 YVCEICNQGFQRDQNLQMHRRRH 94
                     9*********************9 PP
2zf-C2H213.70.00018151172223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C+ C+k +  +s++k H++t+
  Carubv10020337m 151 ICERCSKGYAVQSDYKAHLKTC 172
                      7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.26E-56995No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PfamPF128740.0217290No hitNo description
PROSITE profilePS5015710.977294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355160114144IPR015880Zinc finger, C2H2-like
SMARTSM00355110150177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MIDYERSNNT TKNINNHHHR NPPPSSSSSD LLPDGNGAAV TQKRKRRPAG TPDPEAEVVS  60
LSPRTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRETNEEVK KRVYVCPEPT  120
CLHHNPCHAL GDLVGIKKHF RRKHSNHKQW ICERCSKGYA VQSDYKAHLK TCGTRGHSCD  180
CGRVFSRVES FIEHQDNCTV RRSQPSNHRL PQQQRTTTAT TQTASTADDS ENADLSIGHI  240
LSGHPLQRTQ SSPSDQQPSS LLYPFVSSCA TNGSNSIELQ LLPSRYSADE TSLSLSIGTL  300
DQTTMSEVER KSYEKGETSM ETEEARREVK RQIEIAEMEF AEAKRIRQHA RAELHKAQIF  360
REEASRRISA TMMQITCHNC KQHFQAPAAL VPPPPQPHCT DESTSLAVSY VSSATTEGEK  420
ASDRASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17148198555Zinc finger protein JACKDAW
5b3h_F1e-17148198555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020337m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264780.0BT026478.1 Arabidopsis thaliana At1g68130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302290.10.0protein indeterminate-domain 14
SwissprotQ9C9X70.0IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLR0IEN20.0R0IEN2_9BRAS; Uncharacterized protein
STRINGXP_006302290.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.10.0indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]