PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020159m
Common NameCARUB_v10020159mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 513aa    MW: 55532.1 Da    PI: 9.8932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020159mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05255277223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       C+ Cg++F+  ++L+ H+ + H
  Carubv10020159m 255 ACSQCGEVFPKLESLELHQAVrH 277
                      6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808254282IPR007087Zinc finger, C2H2
PROSITE patternPS000280254277IPR007087Zinc finger, C2H2
SuperFamilySSF563992.59E-20279508No hitNo description
Gene3DG3DSA:3.90.228.108.6E-14281508IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MYASLTNGSF SDVNYKVSPL SRAQIKKLSH SLKSFSFFLS FFLLTMALLT FLPENAEPPQ  60
KHNPPSTKRK KRENPTDQTQ PQKQKPHKPQ KPKKAVLPKQ PSSWDQIKNL LTCKQIEGSR  120
VHDPSKNSNQ PGPSITTNLS PSKLGSSCSS ICSFRDVAHG NTRVVHRADH SPDVANSSTA  180
PDSETRLLTR KPGQHGSSSS RSLTSASTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM  240
IVDPSRYPIT PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW  300
LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQT TRKDARCAAD GNELLRFHCT  360
TLTCSLGARG SSSLCSNLPG CGVCTVIRHG FQGKGAAAAA TANAGGVRTT ASSGRADDLL  420
RCSDDARRVM LVCRVIAGRV KRVDLPAGEA HATAEKKSPV EDGSAVGVAS SGGVFDSVAV  480
NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020159m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023643874.10.0uncharacterized protein LOC17896398
TrEMBLR0HU070.0R0HU07_9BRAS; Uncharacterized protein
STRINGXP_006300451.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein