PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020133m
Common NameCARUB_v10020133mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 529aa    MW: 59101 Da    PI: 4.8794
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020133mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.64.3e-26193247155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Carubv10020133m 193 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
                      68****************************************************8 PP
2Response_reg80.26.9e-27131191107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  Carubv10020133m  13 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQH 104
                      89*********************.***************999999**********************5543.7********************* PP

                      TESEEEESS--HHHH CS
     Response_reg  93 GakdflsKpfdpeel 107
                      Ga d+l Kp+ ++el
  Carubv10020133m 105 GACDYLLKPIRMKEL 119
                      **********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.0E-1501522IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.9E-4310134No hitNo description
SuperFamilySSF521721.99E-3510132IPR011006CheY-like superfamily
SMARTSM004485.6E-3211123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.75512127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.9E-2413120IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.89E-3114127No hitNo description
Gene3DG3DSA:1.10.10.608.3E-28190252IPR009057Homeodomain-like
SuperFamilySSF466893.4E-16191251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22193247IPR006447Myb domain, plants
PfamPF002492.1E-7195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEKGGFSPVG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLAREALRLL RERKDGYDIV  60
ISDVNMPDMD GFKLLEHVGL ELDLPVIMMS VDGETSRVMK GVQHGACDYL LKPIRMKELK  120
IIWQHVLRKK LQEVRDIEGC GYDGGADWIT RYDEAHFLGG GEDVSFGKKR KDFDFEKKLL  180
QDESDPSSSS SKKARVVWSF ELHQKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS  240
HLQKYRLYLS RLEKEKEIKC YSGGVKSIDS SPKDAEVNSG HQSPGKSSFV FSGGMFQKAT  300
ETDPKPLASA SLSDPNTDVI MPPKTKKTRI GFDPPPISSS AFDSLLPWND ASEVLESKPV  360
LYENSFLQQL PLPSQSSYVA NSAPSLMEEE MKPPYETPAG GSSVNADEFL MPQDKISTVT  420
IQDLDPSAIS CMKQQEFSSN VTNNTEAILR SLNWELPESH HSASLDTDLD LSCLNGDRFL  480
ANTGLYFQDY SNSPSLLSEL PLNLWYGNER LPDPDDYSFM VDHGLFIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17189252163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020133m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415320.0AB041532.1 Arabidopsis thaliana ARR11 mRNA for response regulator 11, complete cds.
GenBankAK2282160.0AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10.
GenBankBT0087680.0BT008768.1 Arabidopsis thaliana At1g67710 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302128.10.0two-component response regulator ARR11 isoform X1
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLR0GH620.0R0GH62_9BRAS; Two-component response regulator
STRINGXP_006302128.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]