PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10020051m | ||||||||
Common Name | CARUB_v10020051mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 575aa MW: 62574.1 Da PI: 5.8446 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.7e-31 | 328 | 386 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Carubv10020051m 328 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGNHNHP 386 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.4E-34 | 312 | 388 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-28 | 320 | 388 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 322 | 388 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-37 | 327 | 387 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-27 | 329 | 386 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MDRGWSGLTL DSSSLDLLNP NNRIIAHNNN HRRFSNPLTT TTMSRIGDGD EDGDHNDQKT 60 KISTNGSEFR FPVSLSGIRD REDDDFSSGA AGDNDREVPG EVDFFSDKKS RVCREDDGGF 120 RVKKEEQDDR TDVNTGLNLR TTGNTKSDES MIDDGESSEM EDKRAKIELV KLQDELKRMT 180 MDNQKLRELL TQVSNSYTSL QMHLVSLMQQ QQEQQQSNNK VIEAAEKPEE TIVPRQFIDL 240 GPMRAAGDAG EVSNSSSDEK TRSGGSSPAN EVRDRKRLAR EETPETESNK VQKVNITNQS 300 TFDQSAAEAT MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMATGCP 360 VRKQVQRCAE DRSILITTYE GNHNHPLPPA AVAMASTTTA AANMLLSGSM SSHDGMMNPT 420 NLLARAVLPC STSMATISAS APFPTVTLDL THSSPPPTNG SNPSTSAAAT IDNNTQNNSL 480 MQRPQQQQQQ QQMGNLPPGM LPHVIGQALY NQSKFSGLQF SGGSPSTAAY SQSHAVADTI 540 TALTADPNFT AALAAVISSM INGSNHGEGN NKNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 314 | 390 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10020051m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302067.1 | 0.0 | WRKY transcription factor 6 | ||||
Swissprot | Q9C519 | 0.0 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | R0IA37 | 0.0 | R0IA37_9BRAS; Uncharacterized protein | ||||
STRING | XP_006302067.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10020051m |
Entrez Gene | 17894433 |