PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10019991m | ||||||||
Common Name | CARUB_v10019991mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ARF | ||||||||
Protein Properties | Length: 617aa MW: 67256.2 Da PI: 6.2461 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.4e-24 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+ltpsd+++ g +++p+ +a++ ++ + +l ++d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+vvF+ ++ Carubv10019991m 146 FAKILTPSDANNGGGFSVPRYCADSVfppldflADPPVQ--KLFITDIHGSVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFM--RK 235 89*********************999*****98666666..7************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 s e++++v+r+ Carubv10019991m 236 SADEMFIGVRRT 247 788899***997 PP | |||||||
2 | Auxin_resp | 87.7 | 2.3e-29 | 303 | 385 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++a+++ FevvY+P a++s+Fvv++e+ve+++++ +++G+R+kma+etedss++++ +G+v+++ + ++ W++S+W++L+ Carubv10019991m 303 AMNRAAQGLSFEVVYYPTAGWSDFVVRAEDVESSMSMFWTPGTRVKMAMETEDSSRITWfQGIVSSTYQ-ETGPWRGSPWKQLQ 385 67899******************************************************9999999999.888*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-33 | 139 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-27 | 139 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.985 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-21 | 146 | 247 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-20 | 146 | 248 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.02E-20 | 146 | 242 | No hit | No description |
Pfam | PF06507 | 3.4E-24 | 303 | 385 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
YLPLLLLLLL LLSLTSLQCN QTPMSPPSES AAGDILHRGV DPTIWRACAG ASVQIPQLYS 60 RVYYFPQGHV EHCCASSPLS SSPPPSTSPV PCRISSIQLL ADPITDEVFA HLLLQPMSQD 120 QFAPTNFSRF PAYEGDVDDN NKVTTFAKIL TPSDANNGGG FSVPRYCADS VFPPLDFLAD 180 PPVQKLFITD IHGSVWDFRH IYRGTPRRHL LTTGWSKFVN SKKLIAGDSV VFMRKSADEM 240 FIGVRRTPTS NHGGGTSYYG GDEYNGYYSQ INGALAKEDD GSAKKMFRRT GKGKLTPEAV 300 SEAMNRAAQG LSFEVVYYPT AGWSDFVVRA EDVESSMSMF WTPGTRVKMA METEDSSRIT 360 WFQGIVSSTY QETGPWRGSP WKQLQITWDE PEILQNVKRV NPWQVEIVAN ATQLHPTFPP 420 AKRLKYPQTG GFLSGDDGEI LYPPQRGLSS AAAPDSSPFL NSYTTFPAGM QGARHYEFGS 480 HNPTGFIGEN PPQLSTNNFF SPLPGLGKVS TEKNFGSPPS DNLSPNSNST NLSSGNDLVG 540 NRVPNTAKAN SIKLFGKTIT VQEPSESGLA ESGLCEEDGS KESSDNTTQL SLTHGPRTRE 600 DSRCTPTATQ SISAKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 4e-65 | 33 | 413 | 12 | 360 | Auxin response factor 1 |
4ldw_A | 4e-65 | 33 | 413 | 12 | 360 | Auxin response factor 1 |
4ldw_B | 4e-65 | 33 | 413 | 12 | 360 | Auxin response factor 1 |
4ldx_A | 5e-65 | 33 | 413 | 12 | 360 | Auxin response factor 1 |
4ldx_B | 5e-65 | 33 | 413 | 12 | 360 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10019991m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302016.2 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | R0HYF1 | 0.0 | R0HYF1_9BRAS; Auxin response factor (Fragment) | ||||
STRING | XP_006302016.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 0.0 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10019991m |
Entrez Gene | 17896183 |