PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019945m
Common NameCARUB_v10019945mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 641aa    MW: 71561.5 Da    PI: 7.4875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019945mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.33.7e-1322566361374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                      lv+l++ c ea++s++ +++++++ar+ +l+sp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e +++ ++e+ +al+++++v+Pi+kf
  Carubv10019945m 256 LVNLITGCLEAIRSRNIAAINHFIARIGDLSSPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKF 349
                      578999*****************************99***********************************99******************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+    sk el+etg+rL+ fAe+++++fef++ v++rle
  Carubv10019945m 350 IHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRTNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFEFHP-VVDRLE 438
                      ********************************************************....***************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d++l++L+vk+gE++aVn+v+q+h++l + +  +   +++L l++s++P  +v++eqea+hnse++ +r++++l+yysa+fd+++++l+++s  
  Carubv10019945m 439 DVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAI--RDFLGLIRSTNPVALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLI 530
                      ***************************88777777..99******************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee..........sgslvlgW 362
                      r+k+E++l+grei+n+vaceg++r+erh  +++Wr++le+ GF+++ +se+++ q k+llr+++  ++g ++ve +           g ++l W
  Carubv10019945m 531 RVKIEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGsgNEGfFNVERRdedggaeggrGGGVTLRW 624
                      ***************************************************************9856668999965667888888677888*** PP

             GRAS 363 kdrpLvsvSaWr 374
                      +++pL+++SaW+
  Carubv10019945m 625 SEQPLYTISAWT 636
                      ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.183230603IPR005202Transcription factor GRAS
PfamPF035141.3E-129256636IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AAVAATSATV SAHFPMNTQR LDLPCSSSFT RKETPSNRPL  60
GRSISLDNSN NNNSSKPIER KTSGCSLKQN IKLPPLATTR GNGEGFSWNN DSNINNNRGK  120
KSLKRLAEED ESCLSRAKKT KCENEGGDDD EEKLCFVPSE VISQPLPNWV DSVITELAGI  180
GDKDVESSRP AAVKEASGSS TSASSESHSL SHRVPEPTNG SRNPYSHRGA AEERTSGTIN  240
INNNNHRNDL QRDFELVNLI TGCLEAIRSR NIAAINHFIA RIGDLSSPRG RTPMTRLIAY  300
YIEALALRVA RMWPHIFHIA PPREFDRTVE DESGNALRFL NQVTPIPKFI HFTANEMLLR  360
AFEGKERVHI IDFDIKQGLQ WPSFFQSLAS RTNPPHHVRI TGIGESKLEL NETGDRLHGF  420
AEAMNLQFEF HPVVDRLEDV RLWMLHVKEG ESVAVNCVMQ MHKTLYDGTG AAIRDFLGLI  480
RSTNPVALVL AEQEAEHNSE QLETRVCNSL KYYSAMFDAI HTNLATDSLI RVKIEEMLFG  540
REIRNIVACE GSHRQERHVG FRHWRRMLEQ LGFRSLGVSE REVLQSKMLL RMYGSGNEGF  600
FNVERRDEDG GAEGGRGGGV TLRWSEQPLY TISAWTIGRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6426363626379Protein SCARECROW
5b3h_A4e-6426363625378Protein SCARECROW
5b3h_D4e-6426363625378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019945m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300849.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLR0GD750.0R0GD75_9BRAS; Uncharacterized protein
STRINGXP_006300849.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein