PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10019910m | ||||||||
Common Name | CARUB_v10019900mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | STAT | ||||||||
Protein Properties | Length: 669aa MW: 75790.6 Da PI: 5.4028 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 172.2 | 8.6e-54 | 221 | 339 | 1 | 120 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 ldvvl+na+gqpv+kdvevvasLlyad+ l+ +k++++eapL+i+ +Gvefs drp+kll+Gr+s+klkisqLssk+dnrL+r+kf i++ k+ Carubv10019910m 221 LDVVLSNAIGQPVHKDVEVVASLLYADT-LLEAKMSETEAPLMIRDEGVEFSIDDRPIKLLNGRSSLKLKISQLSSKSDNRLLRVKFGIRNAKE 313 8**************************9.8999************************************************************* PP STAT 95 ypfleavskpirCisrsrntrssslt 120 ypfl+avs+pirCis s ++ s+s t Carubv10019910m 314 YPFLQAVSNPIRCISVSPDVGSLSIT 339 *****************998877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 0.001 | 24 | 145 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 1.14E-7 | 29 | 167 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
CDD | cd10338 | 1.17E-62 | 563 | 668 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 6.2E-8 | 570 | 621 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 6.06E-10 | 571 | 659 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.36 | 574 | 668 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MAGVSAIETD RYSLLEDFNV DVEVDDEEYE SFSLCFWVYL LNSTTFPSTI IRQVHSDMSV 60 SAPFLVLDEN KKMTLLPLTL LHEEAPDPVE KSSWTKVPCV SSKSEFPLEQ WVHVGCQVSR 120 NYMRLVIDGK IQGELFLTSL LTKNSDPECP RKISLFSVGG DGYSVEGYVT CAEALPACHH 180 VEHHYRKDPP LLLSVNNSSS VGIKLDDDGV WKAFCGENFS LDVVLSNAIG QPVHKDVEVV 240 ASLLYADTLL EAKMSETEAP LMIRDEGVEF SIDDRPIKLL NGRSSLKLKI SQLSSKSDNR 300 LLRVKFGIRN AKEYPFLQAV SNPIRCISVS PDVGSLSITP KRLTNVDRPS STESQDILHN 360 TPSVKRIRLG KESDSGSEEL YQHCNSYPQT SRQFEDGNCM RLHEEYNSST DSENFEMRHT 420 ISDSTIFRYC LGNLTDKALL LKEITNNSSD DEVLKFSNQV SLYSGCSHHS YQINMARELI 480 AEGTNAWILI SRNNQHVHWD NVVYEIEEHF MRISKCSSRS LTNQDFELLR RISGSYEYIT 540 QENFEKMWCW LFPVAYSISR GWINGMWRSS SPKWVEGFIS KEEAEHSLQG QEPGTFILRF 600 PVSRIWPHPD AGSLVVSCVG HDFALHHKQL KIDNICESSG RYMDAKPLQD MLLAEPELSR 660 LGRIIRSH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10019910m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221532 | 0.0 | AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300814.1 | 0.0 | SH2 domain-containing protein B | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | R0GD40 | 0.0 | R0GD40_9BRAS; Uncharacterized protein | ||||
STRING | XP_006300813.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | Carubv10019910m |
Entrez Gene | 17894479 |
Publications ? help Back to Top | |||
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