PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019900m
Common NameCARUB_v10019900mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family STAT
Protein Properties Length: 682aa    MW: 77289.3 Da    PI: 5.3266
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019900mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT172.28.8e-542213391120
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 
                      ldvvl+na+gqpv+kdvevvasLlyad+ l+ +k++++eapL+i+ +Gvefs  drp+kll+Gr+s+klkisqLssk+dnrL+r+kf i++ k+
  Carubv10019900m 221 LDVVLSNAIGQPVHKDVEVVASLLYADT-LLEAKMSETEAPLMIRDEGVEFSIDDRPIKLLNGRSSLKLKISQLSSKSDNRLLRVKFGIRNAKE 313
                      8**************************9.8999************************************************************* PP

             STAT  95 ypfleavskpirCisrsrntrssslt 120
                      ypfl+avs+pirCis s ++ s+s t
  Carubv10019900m 314 YPFLQAVSNPIRCISVSPDVGSLSIT 339
                      *****************998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.19E-729167IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103381.70E-60563664No hitNo description
Gene3DG3DSA:3.30.505.106.3E-8570621IPR000980SH2 domain
SuperFamilySSF555507.4E-10571658IPR000980SH2 domain
PROSITE profilePS500019.559574642IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MAGVSAIETD RYSLLEDFNV DVEVDDEEYE SFSLCFWVYL LNSTTFPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMTLLPLTL LHEEAPDPVE KSSWTKVPCV SSKSEFPLEQ WVHVGCQVSR  120
NYMRLVIDGK IQGELFLTSL LTKNSDPECP RKISLFSVGG DGYSVEGYVT CAEALPACHH  180
VEHHYRKDPP LLLSVNNSSS VGIKLDDDGV WKAFCGENFS LDVVLSNAIG QPVHKDVEVV  240
ASLLYADTLL EAKMSETEAP LMIRDEGVEF SIDDRPIKLL NGRSSLKLKI SQLSSKSDNR  300
LLRVKFGIRN AKEYPFLQAV SNPIRCISVS PDVGSLSITP KRLTNVDRPS STESQDILHN  360
TPSVKRIRLG KESDSGSEEL YQHCNSYPQT SRQFEDGNCM RLHEEYNSST DSENFEMRHT  420
ISDSTIFRYC LGNLTDKALL LKEITNNSSD DEVLKFSNQV SLYSGCSHHS YQINMARELI  480
AEGTNAWILI SRNNQHVHWD NVVYEIEEHF MRISKCSSRS LTNQDFELLR RISGSYEYIT  540
QENFEKMWCW LFPVAYSISR GWINGMWRSS SPKWVEGFIS KEEAEHSLQG QEPGTFILRF  600
PVSRIWPHPD AGSLVVSCVG HDFALHHKQL KIDNICESSG RYMDAKPLQD MLLAEPELSR  660
LGSLSPFSRT TNFFFQISIM R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019900m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215320.0AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300814.10.0SH2 domain-containing protein B
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLR0GDK90.0R0GDK9_9BRAS; Uncharacterized protein
STRINGXP_006300813.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.20.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]