PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10019812m | ||||||||
Common Name | CARUB_v100198120mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Nin-like | ||||||||
Protein Properties | Length: 815aa MW: 91292.7 Da PI: 6.3082 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 94.8 | 5.7e-30 | 546 | 597 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le+l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Carubv10019812m 546 AEKNITLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 597 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.405 | 531 | 617 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.4E-26 | 549 | 597 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.66E-23 | 705 | 802 | No hit | No description |
SMART | SM00666 | 3.1E-24 | 716 | 799 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.565 | 716 | 799 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.98E-36 | 717 | 793 | No hit | No description |
Pfam | PF00564 | 2.0E-17 | 717 | 797 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.1E-19 | 717 | 796 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MENNSLPIDP AMDSSFMDGL LLEGCWLETT DASEFLNFSP STSVTPFDPS SFMWSPTQDT 60 AICSSNSLSH MYGQVVAERS SIEDQGRDLS SFNRRWWIGP SGHGSSVMER LVQAVTHIKD 120 FTSERGSLIQ LWVPVDRGGK RVLTTKEQPF SHDPMCQRLA HYREISVNYQ FSTEQEDSGS 180 SSNDLVGLPG RVFLGKVPEW TPDVRFFKNE EYPRVQHAQD CDVRGTLAIP VFEQGSQNCL 240 GVIEVVMTTQ MVKLSPDLDS ICRALQAVDL RSTEVPIRPS LKGPDFSYQA ALPEIRNLLR 300 CACETHKLPL AQTWVSCLKQ SKTGCRHNDE NYIHCVSTID DACYVGDPTV REFHEACSEH 360 HLLKGQGVVG EAFLTNGPCF SSDVSSYKKS EYPLSHHATM FGLHGTVAIR LRCIHTGSVD 420 FVLEFFLPKN CRDIEEQKKM LNALSTIMAH VPRSLRTVTE KELEEGDLMA REVIERGVTL 480 PKIENPSEVP KSDSNLQNAG LVFDEGTTEM GEVGSDYGKG LSVNENSTFS SASGFSRMTE 540 KKRTKAEKNI TLEVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS 600 LQKIQRVIDS VEGVSGHHLP IGSFYANFPN LASSPEASSL QQQSKKTTFL FSSNSQPTKS 660 PGSSCSHSSS CSSETQVNKE DPKDKTRQET INLPRSFKER QTTHLSPSTS SQEDDFLRIK 720 VTYEEEKIRF RMRNSHRLND LLWEIAKRFS IEDVSRYDLK YLDEDNEWVL LRCDDDVEEC 780 VDVCRSFPGQ TIKLLLQLSS QYLSERSSAS GCPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10019812m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493537 | 0.0 | AB493537.1 Arabidopsis thaliana At1g76350 mRNA for hypothetical protein, partial cds, clone: RAAt1g76350. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300747.1 | 0.0 | protein NLP5 | ||||
Swissprot | Q9SFW8 | 0.0 | NLP5_ARATH; Protein NLP5 | ||||
TrEMBL | R0I6G0 | 0.0 | R0I6G0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006300747.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3461 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10019812m |
Entrez Gene | 17894018 |