PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10019754m

Common Name

CARUB_v10019754mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 912aa MW: 101414 Da PI: 6.5796

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10019754m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.4e-29	624	674	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+is+e+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Carubv10019754m 624 EKTISIEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 674 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.405	609	694	IPR003035	RWP-RK domain
Pfam	PF02042	8.8E-26	626	674	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.08E-20	803	893	No hit	No description
SMART	SM00666	3.3E-22	811	893	IPR000270	PB1 domain
PROSITE profile	PS51745	19.653	811	893	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.7E-26	812	893	No hit	No description
CDD	cd06407	5.02E-33	812	892	No hit	No description
Pfam	PF00564	2.2E-18	812	892	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MSSIKIFTTC LLLLFLLLLL LLLLLLLSLC CVEACLNHSF ALKLPGDIHT TLTDEFILFV 60 VVFSRAPVPA CLMELDDLDL SGSWPLDQIT FSSNFKSPVI FSSSEQPFSP LWSFSEAAGD 120 VGGDLYGAPT RFTDYSLLLA SSESETTTKE TTNQVPSPLW GITPLENPDT YCAIKAKMTQ 180 ALRFFKESTG QQHVLAQVWA PVKNRGRYVL TTSGQPFVLG PNSNGLNQYR MVSLTYMFSL 240 DGERDGDLGL PGRVFRKKLP EWTPNVQYYS SKEFSRLGHA LHYNVQGTLA LPVFEPSRQL 300 CVGVVELIMT SPKINYAPEV EKVCKALEAV NLKTSEILNH ETTQICNEGR QNALAEILEI 360 LTVVCETYKL PLAQTWVPCR HRSVLAFGGG FKKSCSSFDG SCMGKVCMST SDLAVYVVDA 420 HVWGFRDACA EHHLQKGQGV AGRAFLSGNL CFCRDVTRFC KTDYPLVHYA RMFKLTSCFA 480 VCLKSTYTGD DEYVLEFFLP PAITDKSEQD CLLGSLFQTM KQHYSSLKVV SETELCENEI 540 SLEVVEASED GMVYSKLEPI RIHHQAPISK DYLELNAPKQ KLSLNSDVVK NNEVADGFER 600 FQTLEPLPEA KTVKKSERKR GKTEKTISIE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ 660 HGISRWPSRK INKVNRSLTR LKHVIDSVQG ADGSLNLTSL SPRPWSRQIS PIENQPAKNF 720 PPASTSPPSY LQDVKIENRD AEDSAGSSTS RASCKVGPIS ETRFRLPTHN QETPRQTALD 780 DSDSSSKNIA NFWTHLSCQD TASPTTLHNK LVSIKATYRE DIIRFKISAE SVSIMELKQQ 840 VAKRLKLDMA AFELKYLDDD SEWVSVSCDA DLSECLETSA AKANTLRLSV HDVTLNFGSS 900 CESSEENMMC L*

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MSSIKIFTTC LLLLFLLLLL LLLLLLLSLC CVEACLNHSF ALKLPGDIHT TLTDEFILFV  60
VVFSRAPVPA CLMELDDLDL SGSWPLDQIT FSSNFKSPVI FSSSEQPFSP LWSFSEAAGD  120
VGGDLYGAPT RFTDYSLLLA SSESETTTKE TTNQVPSPLW GITPLENPDT YCAIKAKMTQ  180
ALRFFKESTG QQHVLAQVWA PVKNRGRYVL TTSGQPFVLG PNSNGLNQYR MVSLTYMFSL  240
DGERDGDLGL PGRVFRKKLP EWTPNVQYYS SKEFSRLGHA LHYNVQGTLA LPVFEPSRQL  300
CVGVVELIMT SPKINYAPEV EKVCKALEAV NLKTSEILNH ETTQICNEGR QNALAEILEI  360
LTVVCETYKL PLAQTWVPCR HRSVLAFGGG FKKSCSSFDG SCMGKVCMST SDLAVYVVDA  420
HVWGFRDACA EHHLQKGQGV AGRAFLSGNL CFCRDVTRFC KTDYPLVHYA RMFKLTSCFA  480
VCLKSTYTGD DEYVLEFFLP PAITDKSEQD CLLGSLFQTM KQHYSSLKVV SETELCENEI  540
SLEVVEASED GMVYSKLEPI RIHHQAPISK DYLELNAPKQ KLSLNSDVVK NNEVADGFER  600
FQTLEPLPEA KTVKKSERKR GKTEKTISIE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ  660
HGISRWPSRK INKVNRSLTR LKHVIDSVQG ADGSLNLTSL SPRPWSRQIS PIENQPAKNF  720
PPASTSPPSY LQDVKIENRD AEDSAGSSTS RASCKVGPIS ETRFRLPTHN QETPRQTALD  780
DSDSSSKNIA NFWTHLSCQD TASPTTLHNK LVSIKATYRE DIIRFKISAE SVSIMELKQQ  840
VAKRLKLDMA AFELKYLDDD SEWVSVSCDA DLSECLETSA AKANTLRLSV HDVTLNFGSS  900
CESSEENMMC L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10019754m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300704.2	0.0	protein NLP6 isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	R0GCV5	0.0	R0GCV5_9BRAS; Uncharacterized protein
STRING	XP_006300704.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10019754m
Entrez Gene	17895218

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]