PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019596m
Common NameCARUB_v10019596mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 141aa    MW: 16231.2 Da    PI: 5.858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019596mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000192143123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C  C + Fs+   L  H++ H
  Carubv10019596m 21 YICDFCERGFSNAQALGGHMNIH 43
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-61747IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.7E-71847No hitNo description
PROSITE profilePS5015711.1772148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MNRKYLDRRS YSWSGSQARP YICDFCERGF SNAQALGGHM NIHRKDRAKL RQADLKEEDN  60
EEAICTTSRN RFEQELIELP FFVDTVGPKT KVEDDKSENC IGDEERNKTR ILERALSQSA  120
EVIDLELRLG LDPYKKPTST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019596m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936501e-171AB493650.1 Arabidopsis thaliana At3g53820 mRNA for hypothetical protein, partial cds, clone: RAAt3g53820.
GenBankAL1329601e-171AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20.
GenBankCP0026861e-171CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankDQ0566221e-171DQ056622.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At3g53820) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293260.11e-101transcriptional regulator TAC1
TrEMBLR0HQC31e-100R0HQC3_9BRAS; Uncharacterized protein
STRINGCagra.0612s0106.1.p1e-101(Capsella grandiflora)
STRINGXP_006293260.11e-101(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-90C2H2 family protein