PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019454m
Common NameCARUB_v10019454mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARF
Protein Properties Length: 534aa    MW: 60846.8 Da    PI: 9.5751
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019454mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.61.5e-20127228199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+lt sd++++g l++pk+ a+++     +g++  ++++  +d++  +W++k+++r++++r++lt+GW+ Fv  + L +g  +++   + ++
  Carubv10019454m 127 FLKILTASDTSTHGGLSVPKRSATKClppldMGISVPTQEIFTKDLHDSVWKFKHSFRGTPQRHLLTTGWSAFVTTKSLVVGVAFILL--RGET 218
                      89*****************************445555669******************************************999999..4599 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      +el+v+++r+
  Carubv10019454m 219 GELRVGIRRA 228
                      99******97 PP
2Auxin_resp62.41.7e-21253324183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a ha++++++F+vv++Pr+  s+F+vk++k+++a+++k+ v +Rf m+feted+se+          +++p +W++S+WrsL+
  Carubv10019454m 253 ALHAFNNQCMFTVVFKPRS--SQFIVKYDKFLDAVNNKFNVESRFTMRFETEDFSEKV--------DNFSP-HWKDSEWRSLQ 324
                      6799**************6..9*********************************985........77788.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-33116240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-29121249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-17126227No hitNo description
SMARTSM010199.9E-18127229IPR003340B3 DNA binding domain
PfamPF023622.1E-18127228IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983127229IPR003340B3 DNA binding domain
PfamPF065071.6E-18253324IPR010525Auxin response factor
PfamPF023097.6E-10409516IPR033389AUX/IAA domain
SuperFamilySSF542775.4E-10431509No hitNo description
PROSITE profilePS5174525.247433514IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDSCNVANVQ PDLSRTLDGS ESYMYEQLWK WCAGPLCHLP NLGDKVYYFP QGHIELVEAS  60
TREELNQIQS NFNLHSKLEC RVIAVRLKKR KKKTDQVYAE ITLIPDATQV VIPTQNDSQY  120
RPKVNSFLKI LTASDTSTHG GLSVPKRSAT KCLPPLDMGI SVPTQEIFTK DLHDSVWKFK  180
HSFRGTPQRH LLTTGWSAFV TTKSLVVGVA FILLRGETGE LRVGIRRARH QQGNITSSLV  240
STENMRHGVI ASALHAFNNQ CMFTVVFKPR SSQFIVKYDK FLDAVNNKFN VESRFTMRFE  300
TEDFSEKVDN FSPHWKDSEW RSLQVRWDEL ASFPRPEKVS PWEIEHIPPS SNVPQSFLLK  360
EQAFTTQVVL PSMTNEGGTS FRLFGVSLVV PSRKNESYQV SNTSKLSQEK KFGLTQTFKL  420
PKMAKSKQFS STKSCTKVQL QGVTVGRALD LSVLNGYDQL IHELEKLFDL KGELRSRNQW  480
EMVFIDHEGD IVLIGDVPWL EFCNMVKKIL ICSKEEIKKL KYERPISQTK PKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1102734522353Auxin response factor 1
4ldw_A1e-1102734522353Auxin response factor 1
4ldw_B1e-1102734522353Auxin response factor 1
4ldx_A1e-1102734522353Auxin response factor 1
4ldx_B1e-1102734522353Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791KKRKK
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019454m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633003.10.0putative auxin response factor 14
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLR0HLE50.0R0HLE5_9BRAS; Auxin response factor
STRINGXP_006293142.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12276731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14