PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019443m
Common NameCARUB_v10019443mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 464aa    MW: 52679.9 Da    PI: 4.7499
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019443mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like53.16.9e-17212278154
          G2-like   1 kprlrWtpeLHerFveaveqLGGs.........ekAtPktilel....mkvkgLtlehvkSHLQkYR 54 
                      kpr+ Wtp+LH++F  ave++G           +kA Pk+il++    m+v+gLt+++++SHLQ  R
  Carubv10019443m 212 KPRMSWTPDLHQKFEAAVEKMGSVesklilicvNKAFPKQILKCmqeeMNVQGLTRNNIASHLQLLR 278
                      79*******************97522222222279******9873333589************9777 PP
2Response_reg65.62.4e-22421461105
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vd + +   l+++++e+  y +v+  ++geea++ l +++  +Dl++ D  mp+++Gl++lk+i +e  +lp+++++   ++e++ e  k 
  Carubv10019443m  42 VLLVDADSNSSLLMKNLMEQYSY-QVTKHEKGEEAMAFLMKSKqeIDLVVWDFHMPDINGLDALKTIGKEM-DLPVVIMSHDHKKETVMESAKN 133
                      899*9999***************.***************777778**********************6644.7*******9999********** PP

                      TESEEEESS--HH CS
     Response_reg  93 GakdflsKpfdpe 105
                      Ga dfl+Kp+++e
  Carubv10019443m 134 GACDFLVKPVSKE 146
                      *********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.12E-2639161IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.8E-2939175No hitNo description
SMARTSM004488.1E-1840151IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.00741156IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-1942146IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.89E-1943151No hitNo description
SuperFamilySSF466892.15E-9210279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-17211280IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-14212279IPR006447Myb domain, plants
PfamPF002494.6E-6214277IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
PSNILDEISG NLRKDVLVCD DEIESPIEDD DDEEFPTTTI RVLLVDADSN SSLLMKNLME  60
QYSYQVTKHE KGEEAMAFLM KSKQEIDLVV WDFHMPDING LDALKTIGKE MDLPVVIMSH  120
DHKKETVMES AKNGACDFLV KPVSKEVTAV LWQHVFRKRM SKSGLDKPDE SETVESDPDE  180
YDDLGQDNLY QSNGEGSGNT CDQKGDKSKF KKPRMSWTPD LHQKFEAAVE KMGSVESKLI  240
LICVNKAFPK QILKCMQEEM NVQGLTRNNI ASHLQLLRWQ KYRQGANKKT SASQETREDS  300
GWRNAGQDPP LVASNPPLNS NVNLQSKGTF FMNDQAVPRT SYFMNDQVAM NPTTQYSSNG  360
YLPMNSNNYF MSNHFTYIDQ FQQQPPPQPQ YLPSLNLSSR LTKQEVAGHM PPAMENSDPL  420
IYNSCFPFDQ DEYFPLVGFN NNNREHFPPA GFNNNFDHQI GRN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019443m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626511e-114AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026861e-114CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638977.10.0putative two-component response regulator ARR20
SwissprotQ9LZJ81e-176ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD90.0R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006293137.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-146response regulator 20