PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10019345m | ||||||||
Common Name | CARUB_v10019345mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 38564 Da PI: 5.3417 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd++l d+++ G g+W++ ++ g++R++k+c++rw +yl Carubv10019345m 14 KGRWTAEEDQILSDYIQANGEGSWRSLPKNAGLKRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++l+v+++ lG++ W+ Ia+ ++ gRt++++k++w+++l Carubv10019345m 67 RGNITPEEEDLIVKLHSTLGNR-WSIIANNLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.018 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.86E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.94 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.02E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGRAPCCEKV GMKKGRWTAE EDQILSDYIQ ANGEGSWRSL PKNAGLKRCG KSCRLRWINY 60 LRSDLKRGNI TPEEEDLIVK LHSTLGNRWS IIANNLPGRT DNEIKNYWNS HLSRKLHSYF 120 RKPTVINVVE NAPKRRPGRT SRSAMKPKRI PNPRNHHKDP ISLKANHQKN KIVLPTTTIE 180 NGEGEKEEDA LMALSSSSFG GAKEPGLGPC GYGDDGCCNP SINGDDGVLC INDDIFDSCF 240 LLNEPDAVHV SSSESNNVEN AEPYGKSYAG NENVEPMADD WDFCWREGQT LWDQKEDLDS 300 VLSWLLTEEE KESEIIRQRD SNDFGQPLDL DQENKMAAWL LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Modulates overall growth by reducing the proliferation activity of meristematic cells and delaying development (PubMed:18359753). Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1 (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:18359753, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10019345m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293058.1 | 0.0 | transcription factor MYB11 | ||||
Swissprot | Q9LZK4 | 0.0 | MYB11_ARATH; Transcription factor MYB11 | ||||
TrEMBL | R0FTY0 | 0.0 | R0FTY0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006293058.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62610.1 | 0.0 | myb domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10019345m |
Entrez Gene | 17885250 |