PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019280m
Common NameCARUB_v10019280mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 255aa    MW: 26606.5 Da    PI: 8.332
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019280mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.7e-382685261
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     ++++l+cprCds+ntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++P+Ggg+rk  k+
  Carubv10019280m 26 QQEQLPCPRCDSNNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPIGGGTRKGAKR 85
                     68999***************************************************8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-30484IPR003851Zinc finger, Dof-type
PfamPF027011.3E-322883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7613084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MPTSDSGESR RIAMKPHGVT APNTEQQEQL PCPRCDSNNT KFCYYNNYNF SQPRHFCKAC  60
RRYWTHGGTL RDIPIGGGTR KGAKRSRTCS SNSASSVSAV NSVVSTANGV RCVTPVLFPQ  120
SNGATHSVNA PLDSDAKGSA LSLCGSFTSL LNHNAAATAT HGSGSVIGLG GFGIGLGSGY  180
DDVGFGLGRA MWPFSTVCDA ATTNVGSNGG HHVVQMPATW QFEGLESNVS GGFVSGEYFA  240
WPDLSITTPG NSLK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019280m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329761e-112AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1.
GenBankAL1333631e-112AL133363.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23.
GenBankCP0026861e-112CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293003.10.0dof zinc finger protein DOF3.4
SwissprotQ390881e-126DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLR0FTS80.0R0FTS8_9BRAS; Uncharacterized protein
STRINGXP_006293003.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.11e-127OBF binding protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]