PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019160m
Common NameCARUB_v10019160mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 209aa    MW: 23750.3 Da    PI: 6.3116
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019160mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.8e-20133166134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++CgttkTp+WR+gp+g +tLCnaCG++yr  +
  Carubv10019160m 133 CTHCGTTKTPMWREGPRGARTLCNACGVRYRTGR 166
                      *******************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.442127163IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-16127177IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-15129189No hitNo description
Gene3DG3DSA:3.30.50.106.4E-16131164IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.82E-17132181No hitNo description
PROSITE patternPS003440133158IPR000679Zinc finger, GATA-type
PfamPF003208.4E-18133166IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSHNNNNVEV VVHEEEDEEE DLGTAMQKMP IPLDQLDRLP NDSVYRLVDE VRDIIEDPNL  60
LFEDSREYGN LHHEEATDDS KLFGNSPNAL SDRFRVSPTR SSSKRGRPKR QYLEGEASHV  120
LDSSYVDITG KSCTHCGTTK TPMWREGPRG ARTLCNACGV RYRTGRLFPE YRPASSPEFK  180
PNVHSNFHRK VMEIRKERNS PPTSPPTP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019160m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292895.11e-154GATA transcription factor 14
SwissprotQ9M1U24e-72GAT14_ARATH; GATA transcription factor 14
TrEMBLR0HP941e-153R0HP94_9BRAS; Uncharacterized protein
STRINGCagra.4440s0004.1.p1e-154(Capsella grandiflora)
STRINGXP_006292895.11e-154(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163681113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.11e-69GATA transcription factor 14