PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018983m
Common NameCARUB_v10018983mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 351aa    MW: 39795.1 Da    PI: 8.4904
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018983mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.1e-32191246156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Carubv10018983m 191 KNRRCWSQELHRRFLNALKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 246
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.527188248IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-28189249IPR009057Homeodomain-like
SuperFamilySSF466891.03E-17189249IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-27191246IPR006447Myb domain, plants
PfamPF002492.7E-7193244IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MIKNLSNIKN HNHKREYIEA LEVERRKINV FQRELPLCLE LVTRAIEAYK REISGTTTEN  60
LYGQSECSEQ TTGECGRVLD LFIPLRHSST SVEEVDDKDV DDDEDDHQHD SHVTETDIDF  120
SDKNMKSDWL KSVQLWNQSD AVVSKRQECS QDNTKSQVEV LNKNGGEERK NNNTKLPENT  180
RNGDHGRGQR KNRRCWSQEL HRRFLNALKQ LGGPHVATPK QIRELMKVDG LTNDEVKSHL  240
QKYRLHARRP SQTTPNNRDS QTQHFVVVGG IWVPQTNHST GNTIVASAKT TPGIYGPMVS  300
PLPSEWPSHS SFSRMSSEDR SRCSNKGSLR CSSSAMSSST RTKTKDAKIS *
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018983m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0855701e-161AY085570.1 Arabidopsis thaliana clone 157740 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292736.10.0transcription factor HHO1 isoform X1
SwissprotQ9LS001e-180HHO1_ARATH; Transcription factor HHO1
TrEMBLR0H8H30.0R0H8H3_9BRAS; Uncharacterized protein
STRINGXP_006292736.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-159G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]