PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018835m
Common NameCARUB_v10018835mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 319aa    MW: 35626 Da    PI: 9.6722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018835mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049628123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C k F +      H+r H
  Carubv10018835m  6 HVCGVCRKKFATLKGVYGHQRIH 28
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-4430IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.45E-8428No hitNo description
PROSITE profilePS501579.847633IPR007087Zinc finger, C2H2
SMARTSM003550.65628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-8116143No hitNo description
Gene3DG3DSA:3.30.160.604.7E-5121143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99121143IPR007087Zinc finger, C2H2
PfamPF139124.7E-8121145IPR007087Zinc finger, C2H2
SMARTSM003550.071121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM00355110275297IPR015880Zinc finger, C2H2-like
PfamPF139120.019279298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSQKLHVCGV CRKKFATLKG VYGHQRIHSS KSNRIEVEDG LQRIWGLKKS RVCSVSASSA  60
KGSSFMTPIE KHEVIEAAIN LVMLSRRVYD FASIRSYDFM DLELQPCPKR SKLQKKTCFG  120
YKCDKCDKSF GCYQALGGHQ RLHRSILAHK RAYTEAKKIV TQPSSFGVFQ EEKILQCVEL  180
KPEFHELLGR SGYEKSSTCS KIRFSAVPSP PEGKKIVSQP SSFGVSQEKI LHCAQSIDDF  240
CEPLALSGFD KSNSCSKTRF SSLHSPLRSK SHSSYKFEIC DKSFVCSQAL GGHQTLHRPL  300
KGLLASDKVY TEYDSSVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018835m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638995.10.0LOW QUALITY PROTEIN: zinc finger protein 43
TrEMBLR0H2120.0R0H212_9BRAS; Uncharacterized protein
STRINGXP_006290406.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-111C2H2 family protein