PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10018791m | ||||||||
Common Name | CARUB_v10018791mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26507.6 Da PI: 6.1676 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l d+v +G+g+W++I r+ g++R++k+c++rw +yl Carubv10018791m 16 KGLWTVEEDNILMDYVLTHGTGQWNRIVRKTGLKRCGKSCRLRWMNYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.8 | 6e-19 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g +T++E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l Carubv10018791m 69 KGTFTEQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 114 799*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.918 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-10 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 28.108 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-18 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-18 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.42E-14 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:2000039 | Biological Process | regulation of trichome morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRIRRREERE NQEFKKGLWT VEEDNILMDY VLTHGTGQWN RIVRKTGLKR CGKSCRLRWM 60 NYLSPNVNKG TFTEQEEDLI IRLHKLLGNR WSLIAKRVPG RTDNQVKNYW NTHLSKKLVG 120 DYPSAVKTTG DDEDSQPSLF ITATTTSSLH HQQENIYENL AKSFDNVVSA SYEDKPKPEP 180 DQTDVLVATT NDPSHYYGNN TLWDHEDEFE LSSLVMMNFA SGDIEYCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-29 | 16 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in leaves. Together with TTG1 and GL3, promotes trichome formation and endoreplication. Regulates the production of a signal that induces hair (trichome) precursor cells on leaf primordia to differentiate. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes (By similarity). {ECO:0000250, ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12356720, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15728674, ECO:0000269|PubMed:9625690}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10018791m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by gibberellins (PubMed:9625690). May be regulated by GEBP and GEBP-like proteins (PubMed:12535344). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:9625690}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519590 | 0.0 | AY519590.1 Arabidopsis thaliana MYB transcription factor (At3g27920) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292555.1 | 1e-172 | trichome differentiation protein GL1 | ||||
Swissprot | P27900 | 1e-154 | GL1_ARATH; Trichome differentiation protein GL1 | ||||
TrEMBL | R0HNH3 | 1e-171 | R0HNH3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4961s0006.1.p | 1e-172 | (Capsella grandiflora) | ||||
STRING | XP_006292555.1 | 1e-172 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27920.1 | 1e-150 | myb domain protein 0 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10018791m |
Entrez Gene | 17886658 |