PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018749m
Common NameCARUB_v10018749mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 281aa    MW: 32006.5 Da    PI: 5.7798
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018749mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC95.54.3e-3070163296
            NF-YC   2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                      l++fw++q  +    k+ +lPla +k+++k+d++vkm+s + Pvll+ka e+fi e+tlr+w ++++ +r+t++ +di+aa+ +++i++ lv+ 
  Carubv10018749m  70 LEMFWAHQNSSG-LHKKPDLPLATVKRVMKSDPNVKMVSWKGPVLLAKASEMFIQEVTLRAWRQTQSRSRTTIRSCDIHAALRSSVIYNELVNL 162
                      789***996654.56889***********************************************************************99986 PP

            NF-YC  96 v 96 
                       
  Carubv10018749m 163 L 163
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.8E-2283150IPR009072Histone-fold
SuperFamilySSF471131.66E-1886167IPR009072Histone-fold
PfamPF008083.4E-1588150IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVKPVIVTSS LIPNPSMQET CSMNEHREPS THSLTQSSDQ RRPFCPAHRE YNDPCNFIFD  60
EQRDLLNQDL EMFWAHQNSS GLHKKPDLPL ATVKRVMKSD PNVKMVSWKG PVLLAKASEM  120
FIQEVTLRAW RQTQSRSRTT IRSCDIHAAL RSSVIYNELV NLLSVEQCFA NHPGVQPQGT  180
THQQMLPPEN VNESNMKVPI DIDQIQQQSL FNLKADHFIE IGEFELDPMI QHDLVAMMKQ  240
NLLLEPSGFD ELEPLTRPSG YDEAKPRTEP ILSTFVAMMI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-177016319117HapE
4g92_C2e-177016319117HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018749m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638912.11e-153nuclear transcription factor Y subunit C-10
TrEMBLR0FRW40.0R0FRW4_9BRAS; Uncharacterized protein
STRINGXP_006292519.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1910667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.15e-24nuclear factor Y, subunit C12