PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018640m
Common NameCARUB_v10018640mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 503aa    MW: 55967 Da    PI: 7.8728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018640mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.92.4e-08345367123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C++CgksF r+ +L +H+r+H
  Carubv10018640m 345 YDCKICGKSFVRPQSLSNHQRVH 367
                      88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.67979106IPR007087Zinc finger, C2H2
PfamPF139121.4E-979103IPR007087Zinc finger, C2H2
SMARTSM003552.279101IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.26E-880101No hitNo description
Gene3DG3DSA:3.30.160.608.2E-480101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-8129156No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5134156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.1E-9134158IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.843134161IPR007087Zinc finger, C2H2
SMARTSM003550.063134156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-11229252No hitNo description
Gene3DG3DSA:3.30.160.607.2E-4230252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.492230257IPR007087Zinc finger, C2H2
PfamPF139121.1E-6230253IPR007087Zinc finger, C2H2
SMARTSM003550.61230252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-11340367No hitNo description
PfamPF000967.0E-6345367IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.36345372IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-7345367IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.0E-4345367IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280347367IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEHEMDEAAM SLVMLSERVC GDESMCLDQF KPIKEKVFDC VESILGFKEM FTHLGFEKSV  60
TCSDVVVALR SELQSNSSRE CNICGKSFGC YQALGGHKRL HRSIKGKLES KEESSLGKKT  120
VSNPSERPES SPGYKCSVCG KSFGCFQALG GHKRLHRSIK GKLESKEENT KDGSSLFGSS  180
EDKKIVSEPS EFEASQEEKI LDCVESKQDF RELHPLNCEL QKRPESSSSY KCNVCGKSFG  240
CFQALGGHKG LHRMIRKQSA RKKEYNESDN SLSHSSEAKK IVSKPSSFEV SQEKVLHCVE  300
LKQDFSELFS YSGLDESSSS CSKTTSFSAL PSTLRCELQK KTQSYDCKIC GKSFVRPQSL  360
SNHQRVHRPN SEQLSRKRKN AKDYNSLSDS LEAKKIVTQP LSFEVSQEKI LHCVESKQDF  420
SELFSHPGFD KSISCSIIPL SSSQRSKPQS SNSTKGESED GYSLFGVTDS EAKKILTPPL  480
SFEVSQDKIL HCVESKQDFS GL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018640m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638995.10.0LOW QUALITY PROTEIN: zinc finger protein 43
TrEMBLR0HN180.0R0HN18_9BRAS; Uncharacterized protein
STRINGXP_006292425.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.14e-89C2H2 family protein