PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10018545m | ||||||||
Common Name | CARUB_v10018545mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YC | ||||||||
Protein Properties | Length: 225aa MW: 25783.5 Da PI: 6.9409 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 96.2 | 2.7e-30 | 58 | 151 | 2 | 96 |
NF-YC 2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 l++fw++q ++ k+ +lPla +k+++k d++vkm+s + Pvll+ka e+fi e+tlr+w ++++ +r+t++ +di+aa+ +++i++ lv+ Carubv10018545m 58 LEMFWAHQNSSEL-HKKPDLPLATVKRVMKCDPNVKMVSWKGPVLLAKASEMFIQEVTLRAWRQTQSRSRTTIRSCDIHAALRSSVIYNELVNL 150 889***9976665.57899**********************************************************************99986 PP NF-YC 96 v 96 Carubv10018545m 151 L 151 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.0E-21 | 70 | 138 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.68E-18 | 71 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-14 | 76 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVKPVIVTSS LIPNPSMQET CSMNEHREPS TRSLTQSSDQ RRPFYPAHRE RDLLNQDLEM 60 FWAHQNSSEL HKKPDLPLAT VKRVMKCDPN VKMVSWKGPV LLAKASEMFI QEVTLRAWRQ 120 TQSRSRTTIR SCDIHAALRS SVIYNELVNL LSVEQCFANH PPQGTTHQQM LPPENVNEPN 180 MKVPIDIDQI QQQSLFNLKA DHFIEIGEFE LDPMIQVVLC SQQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 4e-18 | 58 | 151 | 19 | 117 | HapE |
4g92_C | 4e-18 | 58 | 151 | 19 | 117 | HapE |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10018545m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023638912.1 | 1e-146 | nuclear transcription factor Y subunit C-10 | ||||
TrEMBL | R0FRK5 | 1e-165 | R0FRK5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006292334.1 | 1e-166 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19106 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38140.1 | 2e-25 | nuclear factor Y, subunit C12 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10018545m |
Entrez Gene | 17884887 |