PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018503m
Common NameCARUB_v10018503mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 372aa    MW: 40428.1 Da    PI: 6.0527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018503mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-09205252455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Carubv10018503m 205 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 252
                      8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-15199270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-9199256No hitNo description
PROSITE profilePS5088814.684201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15201269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6205252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDLTGGFGAR SGGAGPCREA IGLESLHLGD EFRQLVTTLP PDNAGGSFTA LLELPSTQAV  60
ELLHFTDSSS SQAAVTAIGG DIAPPLHSFG GTLTFPSNPV LLERAARFSV IATEQQNGNV  120
SGETPTSSVP SNSSANLDRV KTEPAETDSA VEKQVPSPNQ TNRSGKRKDF EKKVKSSTKK  180
NKSSEENEKL PYVHVRARRG QATDSHSLAE RARREKINAR MKLLQELVPG CDKIQGTALV  240
LDEIINHVQS LQRQVEMLSM RLAAVNPRID FNLDTILASE NGSLMDGSFS GTAMQLAWPH  300
QAIETEQSFH HHRQLQPPPP QQWPFEGLNQ PVWGREEDQT HGNDHSNLMA VSENVMVDSA  360
NLHPNQVKME L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018503m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1397730.0AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds.
GenBankBT0030370.0BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292285.10.0transcription factor bHLH60
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLR0HML90.0R0HML9_9BRAS; Uncharacterized protein
STRINGXP_006292285.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.20.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]