PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10018375m | ||||||||
Common Name | CARUB_v10018375mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 14501.8 Da PI: 7.8397 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 81.1 | 1.8e-25 | 6 | 100 | 4 | 98 |
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 Ck r +C ++Cv+apy+pa+++ k+ + k++ ++++ +++ +++++er++ ++s ++eAear+rdPv G++g i+ lq qle++k ++ + Carubv10018375m 6 TCKEVRHNCIEECVFAPYLPATNKDKYTKLSKVYDMRRLAQYVMDIEPSERQICVDSFCFEAEARLRDPVFGVTGYIHLLQLQLEEVKRLIQIA 99 7*************************************************************************************99877665 PP DUF260 98 k 98 k Carubv10018375m 100 K 100 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.511 | 2 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-24 | 6 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MEYSCTCKEV RHNCIEECVF APYLPATNKD KYTKLSKVYD MRRLAQYVMD IEPSERQICV 60 DSFCFEAEAR LRDPVFGVTG YIHLLQLQLE EVKRLIQIAK RDHMMILQLQ RNRQNHRHDH 120 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-18 | 6 | 99 | 14 | 107 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-18 | 6 | 99 | 14 | 107 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10018375m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019101899.1 | 2e-35 | PREDICTED: LOB domain-containing protein 6-like | ||||
TrEMBL | R0FR77 | 2e-85 | R0FR77_9BRAS; Uncharacterized protein | ||||
STRING | XP_006292169.1 | 4e-86 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23660.2 | 9e-23 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10018375m |
Entrez Gene | 17884786 |