PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10018365m | ||||||||
Common Name | CARUB_v10018365mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 400aa MW: 45028.2 Da PI: 8.8282 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.2 | 1.4e-23 | 32 | 97 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++ +++ l+++a++L v +rRRiYDi+NVLe+++++++++kn+++wkg Carubv10018365m 32 RKQKSLGLLCTNFLALYNRDGIEMIGLDDAASKL---GV--ERRRIYDIVNVLESVGVLTRRAKNQYTWKG 97 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 79 | 4.3e-25 | 167 | 247 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +se++i++l+e+ak L+ + +++k+RR+YDi+NVL+++nliek ++k++++w g Carubv10018365m 167 RREKSLGLLTQNFIKLFVCSEARIISLEEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKtqtldSRKPAFKWLG 247 689**************************************999**********************999999*******87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-26 | 28 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.53E-16 | 31 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.6E-28 | 32 | 97 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.3E-20 | 33 | 97 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-22 | 165 | 248 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.2E-31 | 167 | 247 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.82E-14 | 169 | 248 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 5.5E-20 | 169 | 247 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 400 aa Download sequence Send to blast |
MSDLPPERSK MVVYSPSSMS ETSSALHHSY SRKQKSLGLL CTNFLALYNR DGIEMIGLDD 60 AASKLGVERR RIYDIVNVLE SVGVLTRRAK NQYTWKGFAA IPGALKELQE EGVKDTFHRF 120 YVNENVKGSD DEDDDEESSQ PHSSSQTDSS KPGSLPQSSD LSKIDNRREK SLGLLTQNFI 180 KLFVCSEARI ISLEEAAKLL LGDAHNTSIM RTKVRRLYDI ANVLSSMNLI EKTQTLDSRK 240 PAFKWLGYNG EPTFTLSSDL MQIESRKRAF GTDLTNVNVK RSKSSSSSQE NATERRVKMK 300 KHSTPESSYN KSFDAHEARH GSRGYQFGPF APGSGTYSTA GLEDSSRRAF DVENLVSDYH 360 PSYQNQVLKD LFSHYMDAWK TWYTEVTQKN PLPNTSQHR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 8e-40 | 31 | 239 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10018365m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB074533 | 0.0 | AB074533.1 Arabidopsis thaliana mRNA for E2F-like repressor E2L3, complete cds. | |||
GenBank | BT004258 | 0.0 | BT004258.1 Arabidopsis thaliana clone RAFL15-19-A14 (R20743) putative DP-E2F protein 1 (At3g48160) mRNA, complete cds. | |||
GenBank | BT005524 | 0.0 | BT005524.1 Arabidopsis thaliana clone U20743 putative DP-E2F protein 1 (At3g48160) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292160.1 | 0.0 | E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 0.0 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | R0HMC9 | 0.0 | R0HMC9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006292160.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6304 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48160.2 | 0.0 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10018365m |
Entrez Gene | 17887268 |
Publications ? help Back to Top | |||
---|---|---|---|
|