PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018123m
Common NameCARUB_v10018123mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 173aa    MW: 19212.1 Da    PI: 6.1556
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018123mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP82.79.5e-264761381
              TCP 13 TkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssss 81
                     T+   R RR+Rl+++caa++F+L++eLGf++d+ t+ WLl++a+pai ++tg      s++++s++ ++s  +s
  Carubv10018123m  4 TSSKDRHRRIRLPVTCAAQVFQLTQELGFKTDGATVGWLLRNAEPAILAATGHgldttSNDTPSDF-NHSYMNS 76
                     78889************************************************7654422222222.2222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136918.26153IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-21878IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MTPTSSKDRH RRIRLPVTCA AQVFQLTQEL GFKTDGATVG WLLRNAEPAI LAATGHGLDT  60
TSNDTPSDFN HSYMNSYNFH GNHIFYNSPI DNSVHYADTS GLVSHPRENI TGHQFPGAST  120
SFPDLMVNHY RPGHGMLRPS VPQPQPQQQP LSDDFDEVET VMGEQGYYQP RE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018123m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291936.21e-128transcription factor TCP15
TrEMBLR0H6B81e-126R0H6B8_9BRAS; Uncharacterized protein
STRINGXP_006291936.11e-127(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16163510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.15e-25TCP domain protein 16