PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018114m
Common NameCARUB_v10018114mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 176aa    MW: 19975.9 Da    PI: 9.9087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018114mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002293115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C++ F +   L  H+r+H
  Carubv10018114m  93 HKCSICDQIFGTGQALGGHMRKH 115
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.95E-648115No hitNo description
PfamPF139122.0E-104873IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7644976IPR007087Zinc finger, C2H2
SMARTSM003550.744971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PROSITE profilePS501578.76793115IPR007087Zinc finger, C2H2
PfamPF139126.7E-1093117IPR007087Zinc finger, C2H2
SMARTSM003550.01593115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRDRSDYEE SMQHIDIVRS LMMLSQSFVV KQIDVKQSTG SKNNHNNHFE CKTCNRIFDS  60
FQALGGHRAS HKKPKLSVDH EQVKHRKSEN DMHKCSICDQ IFGTGQALGG HMRKHRAIML  120
TEQSAIPSVG FPRPVMNRCN SSKKILDLNL TPLENDLVTI FGKNMAPQID LKFVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17186KKPKLSVDHEQVKHRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018114m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329661e-169AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankCP0026861e-169CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291929.11e-129zinc finger protein ZAT11
SwissprotQ9SLD45e-70ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLR0FQJ51e-128R0FQJ5_9BRAS; Uncharacterized protein
STRINGXP_006291929.11e-128(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-114C2H2 family protein