PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017961m | ||||||||
Common Name | CARUB_v10017961mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 26781.3 Da PI: 8.1056 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 98 | 152 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ k Carubv10017961m 98 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAQHLMLRPRQIEVWFQNRRARSK 152 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.9 | 5.7e-38 | 98 | 186 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ Carubv10017961m 98 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAQHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 186 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 79 | 152 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.41E-19 | 85 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 94 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-17 | 96 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.97E-15 | 97 | 155 | No hit | No description |
Pfam | PF00046 | 9.2E-16 | 98 | 152 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 129 | 152 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.7E-9 | 154 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.0E-22 | 154 | 197 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
LIFLSNFTHF FFLFLSSSIL LLRTLANQKY SDQMAILPEN SSNLDLTISV PGFSSSPPSD 60 EGSGGGREQL KLDMNRLPSS EDGEDEELSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT 120 LNPKQKEALA QHLMLRPRQI EVWFQNRRAR SKLKQTEMEC EYLKRWFGSL TEQNHRLHRE 180 VEELRAMKVG PPTVNSASSL TMCPRCERVT TAATPPNSMA VPARKTFPPQ ERED* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017961m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ431181 | 0.0 | AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290380.2 | 1e-147 | homeobox-leucine zipper protein ATHB-17 | ||||
Swissprot | Q8S9N6 | 1e-137 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | R0HHK2 | 1e-172 | R0HHK2_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006290380.1 | 1e-172 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 1e-120 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017961m |
Entrez Gene | 17884991 |
Publications ? help Back to Top | |||
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