PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017952m
Common NameCARUB_v10017952mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 239aa    MW: 27594.8 Da    PI: 4.9029
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017952mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-173384556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +f++eq++ Le  Fe++  +  +++ + A++lgL+ rqV +WFqN+Ra++k
  Carubv10017952m 33 KRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 84
                     68*************************************************9 PP
2HD-ZIP_I/II117.57.6e-3831122293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +++r+s+eq+k+LE  Fe+e++Lep++Kv++areLglqprqva+WFqn+RAR+ktkqlEk+++ L+++y++l+++ + ++ke+++L +el++
  Carubv10017952m  31 NQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEFNILRASYNNLASQFDIMKKEKQALVSELQR 122
                      589*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.94E-171888IPR009057Homeodomain-like
SMARTSM003898.4E-132390IPR001356Homeobox domain
PROSITE profilePS5007116.4872686IPR001356Homeobox domain
CDDcd000868.72E-133287No hitNo description
PfamPF000467.2E-153384IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-173392IPR009057Homeodomain-like
PRINTSPR000312.8E-55766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000312.8E-56682IPR000047Helix-turn-helix motif
PfamPF021837.4E-1686128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEEGDLFNCC FGEINSGGVT MNKKKMKKSY NQKRFSEEQI KSLELIFESE TRLEPRKKVQ  60
VARELGLQPR QVAIWFQNKR ARWKTKQLEK EFNILRASYN NLASQFDIMK KEKQALVSEL  120
QRLNGEMQKP KEKRDHECCG EQGVALSSST ESHNGKCEPE VRLDSEGIVL CNDGDNNNNI  180
IKTEYFGFEE ETDHEFMSIV EKPDDSCLTS SDNWGGFNSD SLLDQSSSSY PNWWEFWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00013PBMTransfer from AT3G61890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017952m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598280.0AY059828.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (F21F14.6) mRNA, complete cds.
GenBankAY0871870.0AY087187.1 Arabidopsis thaliana clone 32615 mRNA, complete sequence.
GenBankBT0022060.0BT002206.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (At3g61890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291781.11e-177homeobox-leucine zipper protein ATHB-12
SwissprotQ9M2761e-129ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLR0H5X01e-175R0H5X0_9BRAS; Uncharacterized protein
STRINGXP_006291781.11e-176(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-130homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]