PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017943m
Common NameCARUB_v10017943mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 241aa    MW: 26874.5 Da    PI: 8.3286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017943mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06212234223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C++ F+++ +L +Hi + H
  Carubv10017943m 212 VCPKCSRGFRDPKDLLKHIDKdH 234
                      7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.88E-12649No hitNo description
PROSITE profilePS510397.7451059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-101150IPR000058Zinc finger, AN1-type
SMARTSM001542.4E-51352IPR000058Zinc finger, AN1-type
PfamPF014282.3E-131349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-792147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.85E-893145No hitNo description
PROSITE profilePS510397.87898151IPR000058Zinc finger, AN1-type
SMARTSM001540.039101142IPR000058Zinc finger, AN1-type
PfamPF014282.0E-6101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.016211239IPR007087Zinc finger, C2H2
PROSITE patternPS000280213234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGTPEFPDLG KHCTVDYCKQ IDFLPFTCDR CLQVFCLDHR SYMKHDCPKG NRGDVTVVVC  60
PLCAKGVRLN PDEDPNITWE KHVNSDCDPS NYEKAVKKKK CPVPRCRELL TFSNTIKCRD  120
CSIDHCLKHR FGPDHCCSGP KKPESSFSFM GFLSTNTKEP PASSSSSWAS LFSRLGNDIS  180
QKLQFSSGSD GSSEKTQERN GKQNCGKVTV DVCPKCSRGF RDPKDLLKHI DKDHRGTSKA  240
*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017943m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190960.0AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
GenBankBT0062230.0BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291773.11e-177zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-163SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLR0FR491e-175R0FR49_9BRAS; Uncharacterized protein
STRINGXP_006291773.11e-176(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-162C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]