PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017875m | ||||||||
Common Name | CARUB_v10017875mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29742.3 Da PI: 9.3935 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Carubv10017875m 8 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 8.2e-18 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Carubv10017875m 61 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.196 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-30 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-17 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-11 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 27.814 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-17 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.60E-12 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMQEENRKGP WTEQEDILLV NFVHLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LVLELHAKWG NRWSKIARKL PGRTDNEIKN YWRTHMRKKA QEKKRPMSPT 120 SSFSNCSSSS MTTTTTNTQD TSCHSRKSSG KVSFYDTGGS RSTGDMMMNQ ETEDVYSMDD 180 IWREIDHSPV NTIKPVKDIY SEHSHCLSYS TLASPTWESS LDSIWNMDGD KSKMSSSFGN 240 DQFPFCFQHS RSPWSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-28 | 8 | 110 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-27 | 8 | 110 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-27 | 8 | 110 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-28 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-28 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017875m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF272733 | 0.0 | AF272733.1 Arabidopsis thaliana putative transcription factor (MYB48) mRNA, complete cds. | |||
GenBank | AY519594 | 0.0 | AY519594.1 Arabidopsis thaliana MYB transcription factor (At3g46130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291710.1 | 0.0 | transcription factor MYB48 isoform X2 | ||||
Swissprot | Q9LX82 | 1e-160 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | R0HL37 | 0.0 | R0HL37_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291710.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 1e-153 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017875m |
Entrez Gene | 17885605 |
Publications ? help Back to Top | |||
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