PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017870m | ||||||||
Common Name | CARUB_v10017870mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29198.8 Da PI: 9.0993 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.4 | 2.7e-40 | 19 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t+sgyWkatg+ Carubv10017870m 19 LPVGFRFYPTEVELLTFYLRIQLGGGSATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTRSGYWKATGSPG 112 79****************************999**************9656766667888********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++ Carubv10017870m 113 PVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 150 ************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-44 | 16 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.783 | 19 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-20 | 20 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MCQLQQHTNE MGEDHHHELP VGFRFYPTEV ELLTFYLRIQ LGGGSATIHS LIPILDVFSV 60 EPTQLPNLAG ERCRGDAEQW LFFVPRQERE ARGGRPSRTT RSGYWKATGS PGPVFSPDNR 120 VIGVKKTMVF YTGKAPTGRK TKWKMNEYKA VDETTSVSTN PKLRNEFSIC RIYIKSGISR 180 AFDRRPTETY GIERRVPSNR VESSSRATTS TSLETSHSGG NKVDLSVNNA NTSITQSISE 240 MVDGLSQPFW EWEQMNWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-32 | 19 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-32 | 19 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-32 | 19 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-32 | 19 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-32 | 19 | 175 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-32 | 19 | 175 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017870m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL138641 | 3e-89 | AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. | |||
GenBank | CP002686 | 3e-89 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291704.2 | 0.0 | putative NAC domain-containing protein 61 | ||||
Swissprot | Q9M290 | 1e-141 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | R0FPZ0 | 0.0 | R0FPZ0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291704.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-147 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017870m |
Entrez Gene | 17885478 |