PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017800m
Common NameCARUB_v10017800mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 279aa    MW: 31486 Da    PI: 5.4525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017800mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202677156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g+
  Carubv10017800m 26 CQYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAALKLYGH 77
                     68*****999.**********965...5*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-312686No hitNo description
PfamPF008474.0E-142677IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-222785IPR016177DNA-binding domain
SMARTSM003808.4E-372790IPR001471AP2/ERF domain
PROSITE profilePS5103223.2612784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-302785IPR001471AP2/ERF domain
PRINTSPR003673.2E-102839IPR001471AP2/ERF domain
PRINTSPR003673.2E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF KWVPSRKFIS MFPSCGMLNV  120
NAQPSVHIIQ QRLEELKKTG LLSSQSYSSS SSSTESKTNT SLLDEKTSKG ETNNMFQGGD  180
QKKPEIDLTE FLQQLGILKD ESHAEASEVA ECHSPPPWNE QEETGSPFGD QNFSWDTLIE  240
MPRSETETMQ FDSINFGSYD FEDDVSFPSI WDYCGSLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-182784260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017800m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272170.0AK227217.1 Arabidopsis thaliana mRNA for AP2 transcription factor - like protein, complete cds, clone: RAFL09-96-P04.
GenBankAL0496600.0AL049660.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8.
GenBankAY0872430.0AY087243.1 Arabidopsis thaliana clone 332 mRNA, complete sequence.
GenBankBT0289450.0BT028945.1 Arabidopsis thaliana At3g57600 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291644.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX50.0DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLR0FPV40.0R0FPV4_9BRAS; Uncharacterized protein
STRINGXP_006291644.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-167ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]