PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017793m
Common NameCARUB_v10017793mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BES1
Protein Properties Length: 281aa    MW: 30381.9 Da    PI: 9.6422
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017793mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822204.62.8e-63161552145
           DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                      + gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p+          +a p+ss+q
  Carubv10017793m  16 AMGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSRPM---------DTAPPCSSIQ 100
                      789************************************************************************.........8899****** PP

           DUF822  96 sslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvlsl 145
                       s++ssa++sp++sy+asp+sss+psp+++d+i+++ +     + l+p+l++l++
  Carubv10017793m 101 VSPQSSAFQSPIPSYQASPASSSYPSPTRFDHIPNRFDpnqssTYLIPYLQNLAS 155
                      ********************************98764456666888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-6017153IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005773Cellular Componentvacuole
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MTASGGGGGG GGSTAAMGRM PTWKERENNK RRERRRRAIA AKIFTGLRSQ GNYKLPKHCD  60
NNEVLKALCL EAGWIVHEDG TTYRKGSRPM DTAPPCSSIQ VSPQSSAFQS PIPSYQASPA  120
SSSYPSPTRF DHIPNRFDPN QSSTYLIPYL QNLASSGNLA PLRISNSAPV TPPLSSPRGS  180
APRLPRWQSS NFPVSAPSSP TRRLRHYTSI PECDESDVST VDSCRWGSFQ PVNVSQTCPP  240
SPTFNLVGDV SVKPWEGEKI HDVGIDDLEL TLGNNTKGRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-251990372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-251990372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-251990372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-251990372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017793m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024521e-130BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds.
GenBankBT0063101e-130BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291639.10.0BES1/BZR1 homolog protein 1
SwissprotQ9S7F31e-151BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBLR0FPV10.0R0FPV1_9BRAS; Uncharacterized protein
STRINGXP_006291638.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144671721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.11e-137BES1/BZR1 homolog 1