PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017779m
Common NameCARUB_v10017779mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 285aa    MW: 31699.1 Da    PI: 10.2869
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017779mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind362.49e-11112841301
        GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnklla 83 
                      mdddg+  rn+gyyepa a++k nlglqlmssi +r++k+    re+nl ++++++++++r+      m++    +++++      ++dnk+++
  Carubv10017779m   1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSSI-DRNTKPflpgRESNL-MIGSNGSYHPREheasmpMNY----SWINQ------PKDNKFFN 80 
                      99**99..9*******999**************.9**************.************998888888....*****......******** PP

        GAGA_bind  84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                      +l++++      p++++v+s+t+  +s+q++++p ++ s +e +      +    e ++ +k++k++ + +++++pk+kk +k+k++s ++ ++
  Carubv10017779m  81 MLPIST------PNYSNVMSDTSGSNSMQMMHQPVVNTSRFEENPAPPPRE---DEIVQPSKKRKMRGSISSPTVPKAKKPRKPKEESGAT-NN 164
                      ***766......99****************999888888777444433333...3445567788888888999999999999999955333.33 PP

        GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                      v    +++r+k  kks+dlv+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+Lek
  Carubv10017779m 165 V----HQQRVKPAKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEK 254
                      3....336799*********************************************************************************** PP

        GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      La+eGy+++n +DLk+hWA+HGtnkfvtir
  Carubv10017779m 255 LATEGYSFGNSIDLKSHWARHGTNKFVTIR 284
                      *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.4E-1021284IPR010409GAGA-binding transcriptional activator
SMARTSM012262.1E-1691284IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMSS IDRNTKPFLP GRESNLMIGS NGSYHPREHE  60
ASMPMNYSWI NQPKDNKFFN MLPISTPNYS NVMSDTSGSN SMQMMHQPVV NTSRFEENPA  120
PPPREDEIVQ PSKKRKMRGS ISSPTVPKAK KPRKPKEESG ATNNVHQQRV KPAKKSVDLV  180
INGVSMDISG LPVPVCTCTG TPQQCYRWGC GGWQSACCTT NISMYPLPMS TKRRGARISG  240
RKMSQGAFKK VLEKLATEGY SFGNSIDLKS HWARHGTNKF VTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017779m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545890.0AC254589.1 Capsella rubella clone CAP16-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291627.10.0protein BASIC PENTACYSTEINE1
SwissprotQ9SKD01e-180BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLR0HH840.0R0HH84_9BRAS; Uncharacterized protein
STRINGXP_006291627.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-175basic pentacysteine1