PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017770m | ||||||||
Common Name | CARUB_v10017770mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 287aa MW: 31716.7 Da PI: 8.2053 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.8 | 5.9e-16 | 105 | 157 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs f+ Lr++lP + +skKls +++ + +YI +Lq Carubv10017770m 105 KKLNHNASERDRRKKINSLFSSLRSCLPAsD---QSKKLSIPATVSRSLKYIPELQ 157 6789*************************66...*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.564 | 104 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-16 | 105 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 105 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.88E-14 | 105 | 160 | No hit | No description |
Pfam | PF00010 | 3.0E-13 | 105 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-12 | 110 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
NQNNPNQNTA SKLQEKTESN KTCPYIAKMC ALVPPLFPNF GWPSTGEYNS YYLSGDNLND 60 GGFLDFPVPE ETYGAVTAVA HNQNSFGGSV SSEGNELGNS PVVIKKLNHN ASERDRRKKI 120 NSLFSSLRSC LPASDQSKKL SIPATVSRSL KYIPELQEQV KKLIKKKEEL LVQVSGQRNI 180 EHHVKPQPKA VVTYASTVSA TRLGDSEVMV QISSSKVHNF SISNVLSGLE ADGFVLVDIS 240 SSRSQGERLF HTLHLQVEKI ENQKLNCEEL SQRILYLYEE CGNSLR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017770m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488577 | 0.0 | AF488577.1 Arabidopsis thaliana clone bHLH039 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291619.2 | 0.0 | transcription factor ORG3 | ||||
Swissprot | Q9M1K0 | 1e-156 | ORG3_ARATH; Transcription factor ORG3 | ||||
TrEMBL | R0FPT8 | 0.0 | R0FPT8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006291619.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56980.1 | 1e-150 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017770m |
Entrez Gene | 17885498 |