PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017737m
Common NameCARUB_v10017737mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 297aa    MW: 33704.4 Da    PI: 7.2347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017737mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.91.6e-56211471129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL++kv ++ ++   +i evd++kvePwdLp ++k +ekewyfF+ +d+ky+tg+r+nratksgyWkatgkdke+++
  Carubv10017737m  21 LPPGFRFHPTDEELITHYLRPKVLNSFFSS-LAIGEVDLNKVEPWDLPWMAKIGEKEWYFFCVKDRKYPTGSRTNRATKSGYWKATGKDKEIFK 113
                      79************************9998.67***************888899**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +++lvg+kktLvfykgrapkg+kt+Wvmheyrle
  Carubv10017737m 114 -GKTLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 147
                      .999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6218171IPR003441NAC domain
PROSITE profilePS5100557.58621171IPR003441NAC domain
PfamPF023657.0E-3122146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0051091Biological Processpositive regulation of sequence-specific DNA binding transcription factor activity
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDYKVSRIGE IVEEDSDKID LPPGFRFHPT DEELITHYLR PKVLNSFFSS LAIGEVDLNK  60
VEPWDLPWMA KIGEKEWYFF CVKDRKYPTG SRTNRATKSG YWKATGKDKE IFKGKTLVGM  120
KKTLVFYKGR APKGVKTNWV MHEYRLEGEF AIDDLPKTAK NECVISRVFH KRADGTKMHI  180
SGLMFGSGVN KFEPVGLPPL MDSSLYLKNR EDSLSLFSHV TCFSDQTYDD KSLVSDPLLL  240
QEDSSILKML LDNEETQFKK NLQSSGSSES GLTASSWHGH TPYSSGPVNL DCVWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-501817714171NO APICAL MERISTEM PROTEIN
1ut4_B1e-501817714171NO APICAL MERISTEM PROTEIN
1ut7_A1e-501817714171NO APICAL MERISTEM PROTEIN
1ut7_B1e-501817714171NO APICAL MERISTEM PROTEIN
3ulx_A1e-5081461140Stress-induced transcription factor NAC1
4dul_A1e-501817714171NAC domain-containing protein 19
4dul_B1e-501817714171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017737m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626381e-171AY062638.1 Arabidopsis thaliana Unknown protein (MRI12.1) mRNA, complete cds.
GenBankBT0087161e-171BT008716.1 Arabidopsis thaliana At3g29035 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291582.10.0NAC domain-containing protein 59
SwissprotQ9LJW31e-169NAC59_ARATH; NAC domain-containing protein 59
TrEMBLR0HH430.0R0HH43_9BRAS; Uncharacterized protein
STRINGXP_006291582.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-162NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]