PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017705m
Common NameCARUB_v10017705mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 307aa    MW: 34481.4 Da    PI: 4.882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017705mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-1996147156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      ++y+GVr++k +g+++AeIrdps+   r r++lg+f taeeAa a+++a+ +l+g+
  Carubv10017705m  96 KKYRGVRQRK-WGKFAAEIRDPSS---RSRIWLGTFVTAEEAAMAYDRAAIQLKGH 147
                      59*******9.**********965...4************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-3096153No hitNo description
PfamPF008471.3E-1297147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3097153IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2197154IPR016177DNA-binding domain
PROSITE profilePS5103221.91897154IPR001471AP2/ERF domain
SMARTSM003801.8E-3597160IPR001471AP2/ERF domain
PRINTSPR003674.0E-1098109IPR001471AP2/ERF domain
PRINTSPR003674.0E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MERRTRRVKF SEHRTVTTVS AKPTDDSPTL VRITVTDPFA TDSSSSDEDN NVTVAAPRVK  60
RYVEEIRFCQ IQPSPKAKHK AEKAVVDDVS SAVKPKKYRG VRQRKWGKFA AEIRDPSSRS  120
RIWLGTFVTA EEAAMAYDRA AIQLKGHKAL TNFLTPPSPT PVIDLDTVSA CDSGKDSRHS  180
LHSPTSVLRF NANEETEYRP EHDIEPIELS PEIKPTALVK SESSTSLLFP DPYQLPDLSL  240
AGECFWDSEI APDLLFLDGE LKLQPPLPNI EISKEESEDF SFSLNEDFES SPWDVDNFFD  300
QHHSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2294153262ATERF1
3gcc_A1e-2294153262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017705m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291551.10.0ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-147CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLR0H5A30.0R0H5A3_9BRAS; Uncharacterized protein
STRINGXP_006291551.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-139cytokinin response factor 6