PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017660m
Common NameCARUB_v10017660mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 318aa    MW: 35913.8 Da    PI: 6.9891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017660mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC +C ksF +   L  H+r+H
  Carubv10017660m  4 YKCRYCFKSFANGRALGGHMRSH 26
                     9*********************9 PP
2zf-C2H216.13.3e-05201223123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ Cgk+F++   L  H  +H
  Carubv10017660m 201 YKCETCGKVFKSYQALGGHRASH 223
                      9************9999998887 PP
3zf-C2H210.80.0016254276123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F +   L  H r+H
  Carubv10017660m 254 HECPICFRVFASGQALGGHKRSH 276
                      79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.43E-10326No hitNo description
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-5426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.575437IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-4192226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.43E-10196223No hitNo description
PfamPF139121.9E-11200225IPR007087Zinc finger, C2H2
SMARTSM003550.0071201223IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427201228IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037254276IPR007087Zinc finger, C2H2
SMARTSM003550.24254276IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-10254276IPR007087Zinc finger, C2H2
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESYKCRYCF KSFANGRALG GHMRSHIMPN LHVDDKDEDQ ERPSQLSYDT ESDVSSSSSK  60
DKTNGDDPKF AFTSSLLLEE DGESETESSR NVINLTRKRS KRTRKLDSFA LKKKVKTSQL  120
GYKPESDPEP PHSSASDTTT EEDLAFCLMM LSRDKWKKNK SSSDKEVVKE IETDEEEEEE  180
SEEGYNNRLS KMNRATTKGR YKCETCGKVF KSYQALGGHR ASHKKNRVSN KTEQRGGETE  240
HDNVVVVAAE KRIHECPICF RVFASGQALG GHKRSHGIGN LSVNHHQVHQ MESVKQRMID  300
LNLPAPTEED EVSVVFQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017660m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386461e-125AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankCP0026861e-125CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291511.10.0zinc finger protein ZAT9
SwissprotQ9M2021e-159ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLR0H5510.0R0H551_9BRAS; Uncharacterized protein
STRINGXP_006291511.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-125C2H2-like zinc finger protein